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Identifier Type Title Topic Level Length
purlGTN:N00033 News New Tutorial: VGP assembly pipeline
new tutorialassemblypacbiovgp
purlGTN:N00029 News New Tutorials: PacBio data QC and Genome Assembly, and Genome Annotation with Funannotate
new tutorialassemblygenome-annotation
purlGTN:N00008 News New Tutorials: Genome assembly of a MRSA genome
new tutorialassemblymrsaamrnanoporeillumina
purlGTN:F00236 FAQs Why does my assembly graph in Bandage look different to the one pictured in the tutorial?
Assembly
purlGTN:F00211 FAQs Most tools seem to have options for assembly using long and short reads, what are the pros and cons of the different tools?
Assembly
TBA Slides Introduction to Synthetic Biology
Synthetic Biology
TBA Slides Galaxy from a developer point of view
Development in Galaxy
TBA Slides Introduction to Muon Spectroscopy
Materials Science
purlGTN:F00238 FAQs Can we polish the assembly with long reads too?
Assembly
purlGTN:S00032 Slides De Bruijn Graph Assembly
Assembly 2h
purlGTN:S00034 Slides An introduction to get started in genome assembly and annotation
Assembly Introductory 1h
purlGTN:S00030 Slides Genome assembly quality control.
Assembly Introductory
purlGTN:S00029 Slides Deeper look into Genome Assembly algorithms
Assembly Intermediate
purlGTN:S00031 Slides Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19
Assembly 4h
purlGTN:S00033 Slides An Introduction to Genome Assembly
Assembly 30m
purlGTN:S00035 Slides Unicycler Assembly
prokaryote
Assembly 4h
TBA Slides Introducción al análisis de datos de scRNA-seq
single-cell
Single Cell 30m
TBA Slides Una breve introducción a Galaxy
Introduction to Galaxy Analyses
TBA Slides Una introducción al análisis de datos scRNA-seq
single-cell
Single Cell Intermediate 30m
TBA Slides Una Breve Introducción a Galaxy
Introduction to Galaxy Analyses
purlGTN:T00386 Hands-on Assembly of metagenomic sequencing data
assemblymetagenomicsmicrogalaxy
Microbiome Introductory 2H
purlGTN:T00394 Hands-on Antibiotic resistance detection
nanoporeplasmidsassemblyamrmicrogalaxy
Microbiome 3h
TBA Hands-on Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
Microbiome Introductory 1H
TBA Hands-on Pulsar usage on SURF Research Cloud
deploying
Galaxy Server administration Introductory 30m
TBA Hands-on Adding file-sources to Galaxy
earth-systemoceandatawork-in-progress
Galaxy Server administration 15m
TBA Hands-on Galaxy usage on SURF Research Cloud
deploying
Galaxy Server administration Introductory 30m
purlGTN:T00273 Hands-on Designing plasmids encoding predicted pathways by using the BASIC assembly method
Synthetic Biology 15M
TBA Hands-on Cleaning GBIF data using OpenRefine
Ecology 0h45m
purlGTN:T00422 Hands-on Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
MetadataEMLEcologyBiodiversityFAIRData Paper
Ecology 30M
TBA Hands-on Data submission using ENA upload Tool
Ecology 2h
purlGTN:T00033 Hands-on Genome assembly using PacBio data
assemblypacbio
Assembly Intermediate 6h
purlGTN:T00031 Hands-on De Bruijn Graph Assembly
Assembly Introductory 2h
purlGTN:T00030 Hands-on Chloroplast genome assembly
plantsnanoporejbrowse1
Assembly 2h
purlGTN:T00036 Hands-on Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illuminaassemblymicrogalaxy
Assembly 2h
purlGTN:T00028 Hands-on Genome Assembly Quality Control
assemblyquality control
Assembly Intermediate 2h
purlGTN:T00331 Hands-on Large genome assembly and polishing
assemblypolishingnanoporeplants
Assembly 2h
purlGTN:T00453 Hands-on Assembly of the mitochondrial genome from PacBio HiFi reads
Assembly 1H
purlGTN:T00037 Hands-on Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanoporeassemblyamrmicrogalaxy
Assembly Introductory 2h
purlGTN:T00029 Hands-on Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19
Assembly Intermediate 4h
purlGTN:T00039 Hands-on Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbioeukaryoteVGP
Assembly Intermediate 5h
purlGTN:T00452 Hands-on Decontamination of a genome assembly
Assembly 1H30M
purlGTN:T00034 Hands-on An Introduction to Genome Assembly
Assembly Introductory 30m
purlGTN:T00355 Hands-on ERGA post-assembly QC
plantsanimalsgenomeassemblyQC
Assembly 3H
purlGTN:T00038 Hands-on Unicycler Assembly
prokaryotemicrogalaxy
Assembly Introductory 4h
TBA Hands-on Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
Imaging Intermediate 1H
TBA Hands-on Neoantigen 6: Predicting HLA Binding
label-free
Proteomics 3H
TBA Hands-on Neoantigen 7: IEDB binding PepQuery Validated Neopeptides
label-free
Proteomics 3H
TBA Hands-on Neoantigen 3: Database merge and FragPipe discovery
label-free
Proteomics 3H
TBA Hands-on Neoantigen 5: Variant Annotation
label-free
Proteomics 3H
TBA Hands-on Neoantigen 2: Non-normal-Database-Generation
label-free
Proteomics 3H
TBA Hands-on Neoantigen 4: PepQuery2 Verification
label-free
Proteomics 3H
TBA Hands-on Neoantigen 1: Fusion-Database-Generation
label-free
Proteomics 2H
purlGTN:T00290 Hands-on De novo transcriptome assembly, annotation, and differential expression analysis
Transcriptomics 3H
TBA Hands-on Creating community content
Galaxy Community Building 30M
TBA Hands-on Filtrado, representación y exploración de secuenciación de ARN de células únicas
single-cell10xpaper-replicationinteractive-toolstranscriptomics
Single Cell Advanced 3H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics
Single Cell Advanced 3H
TBA Hands-on Generación de una matriz de datos de secuenciación de ARN de células únicas utilizando Alevin
single-cell10xpaper-replicationtranscriptomics
Single Cell Advanced 3H
TBA Hands-on Breve introducción a Galaxy - en español
Introduction to Galaxy Analyses Introductory 30m
TBA Hands-on Production d'indicateurs champs de bloc
Ecology 1H
purlGTN:W00008 Workflow Intro to Genome Assembly
Assembly
purlGTN:W00125 Workflow Metagenomics assembly tutorial workflow
Microbiome
purlGTN:W00126 Workflow workflow-generate-dataset-for-assembly-tutorial
Microbiome
TBA Workflow WF2_Discovery-Workflow
Microbiome
TBA Workflow WF1_Database_Generation_Workflow
Microbiome
TBA Workflow WF4_Quantitation_Workflow
Microbiome
TBA Workflow WF3_VERIFICATION_WORKFLOW
Microbiome
TBA Workflow WF5_Data_Interpretation_Worklow
Microbiome
purlGTN:W00231 Workflow Genetic Design (BASIC Assembly)
Synthetic Biology
purlGTN:W00007 Workflow Genome Assembly using PacBio data
Assembly
purlGTN:W00004 Workflow Chloroplast-genome-assembly-and-annotation
Assembly
purlGTN:W00018 Workflow Genome Assembly of MRSA using Illumina MiSeq Data
Assembly
purlGTN:W00001 Workflow Genome Assembly Quality Control
Assembly
TBA Workflow Metagenomics assembly tutorial workflow
Assembly
TBA Workflow workflow-generate-dataset-for-assembly-tutorial
Assembly
purlGTN:W00009 Workflow Assembly polishing - upgraded
Assembly
purlGTN:W00010 Workflow Assembly with Flye - upgraded
Assembly
purlGTN:W00012 Workflow Combined workflows for large genome assembly - upgraded
Assembly
purlGTN:W00285 Workflow Mitogenome-Assembly-VGP0
Assembly
purlGTN:W00019 Workflow Genome Assembly of MRSA using Oxford Nanopore MinION (and Illumina data if available)
Assembly
purlGTN:W00002 Workflow assembly_with_preprocessing
Assembly
purlGTN:W00003 Workflow assembly_with_preprocessing_and_sra_download
Assembly
purlGTN:W00021 Workflow VGP assembly: training workflow
Assembly
purlGTN:W00284 Workflow Assembly-decontamination-VGP9
Assembly
purlGTN:W00000 Workflow Post-assembly workflow
Assembly
TBA Workflow Data management in Medicinal Chemistry workflow
FAIR Data, Workflows, and Research
TBA Workflow GTN Tutorial: Data manipulation Olympics - all steps and exercises
Foundations of Data Science