RNAstar: Why do we set 36 for 'Length of the genomic sequence around annotated junctions'?


RNA STAR is using the gene model to create the database of splice junctions, and that these don’t “need” to have a length longer than the reads (37bp).

Still have questions?
Gitter Chat Support
Galaxy Help Forum
Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet  topics/transcriptomics/tutorials/ref-based/faqs/rnastar_tool.md %}
Persistent URL
Resource purlPURL: https://gxy.io/GTN:F00336