Contributing to the Galaxy Training Material

Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (more than 7,000 in the ToolShed), it can be used by people without any computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable.
In 2016, the Galaxy Training Network decided to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Before you start: Designing your lessons

These tutorials will guide you on the pedagogy to create impactful training material

Lesson Slides Hands-on Recordings
Design and plan session, course, materials
Principles of learning and how they apply to training and teaching

Getting Started with the GTN

These tutorials will get you started with the basics needed to contribute to the GTN. First we will show you how you can build the GTN website on GitPod or locally, and then the basics of creating tutorials and slides.

Lesson Slides Hands-on Recordings
Preview the GTN website as you edit your training material
Creating a new tutorial
Creating content in Markdown
Creating Slides
Updating tool versions in a tutorial

Advanced GTN Materials writing

Tutorials showing you how to use some advanced GTN features in your training materials.

Lesson Slides Hands-on Recordings
Adding auto-generated video to your slides
Including a new topic
Teaching Python
Tools, Data, and Workflows for tutorials

Contributing through GitHub

How to collaborate with the GTN

Lesson Slides Hands-on Recordings
Contributing to the Galaxy Training Network with GitHub
Contributing with GitHub via its interface

Analyses using GTN data

Over the years publications about the GTN and GTN communities have been published, and used GTN (meta)data to do it. These tutorials will show you how to leverage some of the data already contained within the GTN, but beware, they generally require programming skills!

Lesson Slides Hands-on Recordings
Single Cell Publication - Data Analysis
Single Cell Publication - Data Plotting

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings
Adding Quizzes to your Tutorial
Creating Interactive Galaxy Tours
GTN Metadata
Generating PDF artefacts of the website
Overview of the Galaxy Training Material
Updating diffs in admin training
FAIR Galaxy Training Material

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn Grüning

Contributors

This material was contributed to by:

Melissa Burke avatar Melissa Burkeorcid logoArmin Dadras avatar Armin DadrasNiall Beard avatar Niall BeardAllegra Via avatar Allegra Viaorcid logoNicola Soranzo avatar Nicola SoranzoPatricia Palagi avatar Patricia PalagiSimon Bray avatar Simon Brayorcid logoVojdan Kjorveziroski avatar Vojdan Kjorveziroskiorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoJulia Jakiela avatar Julia Jakielaorcid logoSonja Filiposka avatar Sonja FiliposkaАrnaud Gingold avatar Аrnaud GingoldMehmet Tekman avatar Mehmet TekmanPablo Moreno avatar Pablo Morenoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoPhil Reed avatar Phil Reedorcid logoBjörn Grüning avatar Björn Grüningorcid logoCarolin Leister avatar Carolin Leisterorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoLinelle Abueg avatar Linelle Abuegorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoSimon Gladman avatar Simon Gladmanorcid logoAchim Winandi avatar Achim WinandiMarie Josse avatar Marie Josseorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTeresa Müller avatar Teresa MüllerBazante Sanders avatar Bazante Sandersorcid logoBérénice Batut avatar Bérénice Batutorcid logoLucille Delisle avatar Lucille Delisleorcid logoWendi Bacon avatar Wendi BaconAndrea Bagnacani avatar Andrea BagnacaniCyril Monjeaud avatar Cyril Monjeaudorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoIrakleitos Souyioultzoglou avatar Irakleitos Souyioultzoglouorcid logoDominique Green avatar Dominique Greenorcid logoMartin Čech avatar Martin Čechorcid logoHelena Rasche avatar Helena Rascheorcid logoChristine Hadrossek avatar Christine Hadrossekorcid logoSaskia Hiltemann avatar Saskia HiltemannDonny Vrins avatar Donny Vrinsorcid logoMarisa Loach avatar Marisa Loachorcid logoCristóbal Gallardo avatar Cristóbal GallardoWilliam Durand avatar William DurandMarius van den Beek avatar Marius van den BeekGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnastas Mishev avatar Anastas Mishev

Funding

These individuals or organisations provided funding support for the development of this resource