Contributing to the Galaxy Training Material
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (more than 7,000 in the ToolShed), it can be used by people without any computer science skills, it trains to use technology, outlining available resources and efforts that have made them accessible to researchers, it is scalable.
In 2016, the Galaxy Training Network decided to set up a new infrastructure for delivering easily Galaxy related training material. The idea was to develop something open and online based on a community effort, as always in Galaxy.
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Before you start: Designing your lessons
These tutorials will guide you on the pedagogy to create impactful training material
Lesson | Slides | Hands-on | Recordings |
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Design and plan session, course, materials
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Principles of learning and how they apply to training and teaching
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Getting Started with the GTN
These tutorials will get you started with the basics needed to contribute to the GTN. First we will show you how you can build the GTN website on GitPod or locally, and then the basics of creating tutorials and slides.
Advanced GTN Materials writing
Tutorials showing you how to use some advanced GTN features in your training materials.
Lesson | Slides | Hands-on | Recordings |
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Adding auto-generated video to your slides
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Including a new topic
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Teaching Python
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Tools, Data, and Workflows for tutorials
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Contributing through GitHub
How to collaborate with the GTN
Lesson | Slides | Hands-on | Recordings |
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Contributing with GitHub via command-line
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Contributing with GitHub via its interface
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Analyses using GTN data
Over the years publications about the GTN and GTN communities have been published, and used GTN (meta)data to do it. These tutorials will show you how to leverage some of the data already contained within the GTN, but beware, they generally require programming skills!
Lesson | Slides | Hands-on | Recordings |
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Single Cell Publication - Data Analysis | |||
Single Cell Publication - Data Plotting |
Other
Assorted Tutorials
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Bérénice Batut Björn GrüningContributors
This material was contributed to by:
Carolin Leister Irakleitos Souyioultzoglou Wolfgang Maier Helena Rasche Anthony Bretaudeau Gildas Le Corguillé Nicola Soranzo Andrea Bagnacani Pavankumar Videm Martin Čech Julia Jakiela Achim Winandi Yvan Le Bras Linelle Abueg Pablo Moreno Bazante Sanders Аrnaud Gingold Mehmet Tekman Krzysztof Poterlowicz Bert Droesbeke Rahmot Afolabi Simon Gladman Cristóbal Gallardo Allegra Via Bérénice Batut William Durand Patricia Palagi Cyril Monjeaud Marisa Loach Katarzyna Kamieniecka Marius van den Beek Fotis E. Psomopoulos Peter van Heusden Simon Bray Melissa Burke Donny Vrins Christine Hadrossek Saskia Hiltemann Dominique Green Sonja Filiposka Niall Beard Björn Grüning Nate Coraor Marie Josse Vojdan Kjorveziroski Lucille Delisle Teresa Müller Anastas Mishev Wendi BaconFunding
These individuals or organisations provided funding support for the development of this resource