Cristóbal Gallardo
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Tutorials
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Visualisation
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Visualisation with Circos
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Assembly
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VGP assembly pipeline - short version
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Assembly
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VGP assembly pipeline
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Single Cell
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Analysis of plant scRNA-Seq Data with Scanpy
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Metagenomics
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16S Microbial analysis with Nanopore data
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Transcriptomics
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Whole transcriptome analysis of Arabidopsis thaliana
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Using Galaxy and Managing your Data
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Understanding Galaxy history system
📝
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Introduction to Galaxy Analyses
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Introduction to Genomics and Galaxy
Slides
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Assembly
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Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
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Sequence analysis
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Mapping
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Transcriptomics
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Whole transcriptome analysis of Arabidopsis thaliana
News
14 March 2022
We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline (fig. 1) is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
Full Story
10 April 2021
Plant lovers are in luck! A new tutorial on this fascinating kingdom has been added to the GTN. It details the necessary steps to identify potential targets of brassinosteroid-induced miRNAs. Brassinosteroids are phytohormones that have the ability to stimulate plant growth and confer resistance against abiotic and biotic stresses. These characteristics have led to great interest in the field of biotechnology due to its potential for increasing agricultural productivity.
Full Story
Cristóbal Gallardo
Delphine Lariviere
Alex OstrovskyWe are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline (fig. 1) is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
Full Story
Pavankumar Videm
Beatriz Serrano-SolanoPlant lovers are in luck! A new tutorial on this fascinating kingdom has been added to the GTN. It details the necessary steps to identify potential targets of brassinosteroid-induced miRNAs. Brassinosteroids are phytohormones that have the ability to stimulate plant growth and confer resistance against abiotic and biotic stresses. These characteristics have led to great interest in the field of biotechnology due to its potential for increasing agricultural productivity.
Full Story