15 May 2023
| Author(s) |
  Cristóbal Gallardo
|
The GTN hosts a new training for analyzing alternative splicing at genome-wide scale!
Full StoryCristóbal Gallardo
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
Tutorials
- Assembly / ERGA post-assembly QC
- Assembly / VGP assembly pipeline
- Assembly / VGP assembly pipeline - short version
- Contributing to the Galaxy Training Material / Principles of learning and how they apply to training and teaching ✍️
- Single Cell / Analysis of plant scRNA-Seq Data with Scanpy
- Metagenomics / 16S Microbial analysis with Nanopore data
- Introduction to Galaxy Analyses / Introduction to Genomics and Galaxy
- Visualisation / Visualisation with Circos
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
- Transcriptomics / Genome-wide alternative splicing analysis ✍️
- Using Galaxy and Managing your Data / Understanding Galaxy history system 📝
Slides
- Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
- Sequence analysis / Mapping
- Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
- Transcriptomics / Identification of non-canonical ORFs and their potential biological function
News
14 March 2022
new tutorial
assembly
pacbio
vgp
Delphine Lariviere
Alex OstrovskyWe are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
Full Story
10 April 2021
new tutorial
transcriptomics
plants
mirna
Pavankumar Videm
Beatriz Serrano-SolanoPlant lovers are in luck! A new tutorial on this fascinating kingdom has been added to the GTN. It details the necessary steps to identify potential targets of brassinosteroid-induced miRNAs. Brassinosteroids are phytohormones that have the ability to stimulate plant growth and confer resistance against abiotic and biotic stresses. These characteristics have led to great interest in the field of biotechnology due to its potential for increasing agricultural productivity.
Full Story