Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Romane LIBOUBAN

Stéphanie Robin

Anton Nekrutenko

Anthony Bretaudeau

Valentin Loux

Anika Erxleben

Anna Syme

Saskia Hiltemann

Teresa Müller

Mateo Boudet

Delphine Lariviere

Torsten Seemann

Simon Gladman

Jonathan Kreplak

Guillaume Gautreau

Bazante Sanders

Björn Grüning

Ekaterina Polkh

Cristóbal Gallardo

Deepti Varshney

William Durand

Simon Bray

Miaomiao Zhou

Helena Rasche

Nicola Soranzo

Erwan Corre

Esteban Perez-Wohlfeil

Felicitas Kindel

Jasper Ouwerkerk

Gildas Le Corguillé

Laura Leroi

Nathan Dunn

Niall Beard

Paul Zierep

Twishi Gulati

Kenji Fujihara

Bérénice Batut

Hélène Chiapello

Alexandre Cormier

Maria Doyle

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

ABRomics

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

IFB

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.