Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Cristóbal Gallardo

Laura Leroi

Niall Beard

Delphine Lariviere

Jonathan Kreplak

Miaomiao Zhou

Jasper Ouwerkerk

Anton Nekrutenko

Saskia Hiltemann

Nicola Soranzo

Romane LIBOUBAN

Teresa Müller

Mateo Boudet

Björn Grüning

Anthony Bretaudeau

Nathan Dunn

Bazante Sanders

Anika Erxleben

Bérénice Batut

Deepti Varshney

Felicitas Kindel

Torsten Seemann

Kenji Fujihara

Hélène Chiapello

Esteban Perez-Wohlfeil

Anna Syme

Erwan Corre

Alexandre Cormier

Stéphanie Robin

Simon Bray

Paul Zierep

Maria Doyle

Valentin Loux

William Durand

Gildas Le Corguillé

Ekaterina Polkh

Guillaume Gautreau

Simon Gladman

Twishi Gulati

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

Avans

ELIXIR Europe

IFB