Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Twishi Gulati

Stéphanie Robin

Laura Leroi

Deepti Varshney

Delphine Lariviere

Esteban Perez-Wohlfeil

Simon Gladman

Nathan Dunn

Björn Grüning

Erwan Corre

Anthony Bretaudeau

Alexandre Cormier

Bazante Sanders

Romane LIBOUBAN

Mateo Boudet

Gildas Le Corguillé

Kenji Fujihara

Ekaterina Polkh

Bérénice Batut

Teresa Müller

Niall Beard

Torsten Seemann

Anna Syme

Anton Nekrutenko

Paul Zierep

Jasper Ouwerkerk

Saskia Hiltemann

Cristóbal Gallardo

Maria Doyle

Jonathan Kreplak

Anika Erxleben

Simon Bray

Felicitas Kindel

William Durand

Miaomiao Zhou

Nicola Soranzo

Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

ELIXIR Europe

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

IFB

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.