William Durand

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

37 Tutorials

• Using Galaxy and Managing your Data / Using dataset collections 🧐
• Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
• Development in Galaxy / JavaScript plugins 🧐
• Development in Galaxy / Data source integration 🧐
• Development in Galaxy / Galaxy Webhooks 🧐
• Development in Galaxy / Generic plugins 🧐
• Genome Annotation / Genome Annotation 🧐
• Assembly / Unicycler Assembly 🧐
• Assembly / An Introduction to Genome Assembly 🧐
• Assembly / De Bruijn Graph Assembly 🧐
• Introduction to Galaxy Analyses / NGS data logistics 🧐
• Introduction to Galaxy Analyses / From peaks to genes 🧐
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐
• Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours 🧐
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
• Contributing to the Galaxy Training Material / Creating content in Markdown 🧐
• Variant Analysis / Calling variants in diploid systems 🧐
• Variant Analysis / Calling very rare variants 🧐
• Variant Analysis / Calling variants in non-diploid systems 🧐
• Transcriptomics / Differential abundance testing of small RNAs 🧐
• Transcriptomics / Reference-based RNA-Seq data analysis 🧐
• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq 🧐
• Transcriptomics / Reference-based RNAseq data analysis (long) 🧐
• Proteomics / Protein FASTA Database Handling 🧐
• Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL) 🧐
• Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS 🧐
• Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker 🧐
• Proteomics / Secretome Prediction 🧐
• Microbiome / Analyses of metagenomics data - The global picture 🧐
• Microbiome / 16S Microbial Analysis with mothur (extended) 🧐
• Sequence analysis / Mapping 🧐
• Sequence analysis / Quality Control 🧐
• Ecology / RAD-Seq to construct genetic maps 🧐
• Ecology / RAD-Seq Reference-based data analysis 🧐
• Ecology / RAD-Seq de-novo data analysis 🧐
• Epigenetics / DNA Methylation data analysis 🧐
• Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) 🧐

21 Slides

• Development in Galaxy / Galaxy from a developer point of view 🧐
• Using Galaxy and Managing your Data / Getting data into Galaxy 🧐
• Development in Galaxy / Galaxy Interactive Tours 🧐
• Development in Galaxy / Tool Dependencies and Conda 🧐
• Development in Galaxy / Tool development and integration into Galaxy 🧐
• Development in Galaxy / Galaxy Webhooks 🧐
• Assembly / Unicycler Assembly 🧐
• Assembly / An Introduction to Genome Assembly 🧐
• Introduction to Galaxy Analyses / Options for using Galaxy 🧐
• Introduction to Galaxy Analyses / Introduction to Galaxy 🧐
• Contributing to the Galaxy Training Material / Contributing with GitHub via command-line 🧐
• Contributing to the Galaxy Training Material / Overview of the Galaxy Training Material 🧐
• Variant Analysis / Introduction to Variant analysis 🧐
• Transcriptomics / Introduction to Transcriptomics 🧐
• Microbiome / Introduction to Microbiome Analysis 🧐
• Sequence analysis / Mapping 🧐
• Sequence analysis / Quality Control 🧐
• Galaxy Server administration / Galaxy from an administrator's point of view 🧐
• Galaxy Server administration / Advanced customisation of a Galaxy instance 🧐
• Epigenetics / Introduction to ChIP-Seq data analysis 🧐
• Epigenetics / Introduction to DNA Methylation data analysis 🧐

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GitHub Activity

github Issues Reported

20 Merged Pull Requests

See all of the github Pull Requests and github Commits by William Durand.

• Update Gemfile.lock
• Add constraints on travis-ci
• Add files to setup a Heroku app
• Add dropdown for help, share logic across pages
• Reorder topic tables

Reviewed 41 PRs

We love our community reviewing each other's work!

• LICENSE update: Add MIT license for infrastructure / scripts
  review-needed
• Add non translation of words
  template-and-tools
  biohackathon
• Add a back/up button to slides
  template-and-tools
• Add expandable/collapsing boxes (for solution and more info) with Markdown inside
• Added schema.org annotations for training materials

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