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Useful when presenting.
JavaScript sources and CSS sources are in the $GALAXY_ROOT/client
folder.
Whenever you make changes there, you will need to re-build Galaxy's frontend with:
$ cd $GALAXY_ROOT$ make client
This requires Node.
The language for labels used in the JS source code is English, but can be wrapped in l()
which makes it translatable.
_l( 'Help' )
"Analyze Data" : false,
The language for labels used in the JS source code is English, but can be wrapped in l()
which makes it translatable.
_l( 'Help' )
"Analyze Data" : false,
"Analyze Data" :"Analyse de données",
Open the client/galaxy/scripts/layout/menu.js
var helpTab = { id : 'help', title : _l('Help'), tooltip : _l('Support, contact, and community'), menu : [{ title : _l('Support'), url : options.support_url, target : '_blank' },{ title : _l('Search'), url : options.search_url, target : '_blank'
Plenty of customisation can be achieved using settings in the main configuration file galaxy.yml
The tool panel search uses a pre-built index that is compiled during Galaxy
boot. You can tweak tool panel search by configuring boosts in galaxy.yml
.
tool_name_boost: 9tool_section_boost: 3tool_description_boost: 2tool_label_boost: 1tool_stub_boost: 5tool_help_boost: 0.5
You can also manipulate the number of tools returned for any query by changing
the tool_search_limit
. This will display more or fewer tools for any given
query.
# Enable/ disable Ngram-search for tools. It makes tool# search results tolerant for spelling mistakes in the query# by dividing the query into multiple ngrams and search for# each ngramtool_enable_ngram_search: true# Set minimum and maximum sizes of ngramstool_ngram_minsize: 3tool_ngram_maxsize: 5
# Verbosity of console log messages.log_level: DEBUG
These are python logging levels.
# The URL linked by the "Wiki" link in the "Help" menu.wiki_url: https://galaxyproject.org/# The URL linked by the "Support" link in the "Help" menu.support_url: https://galaxyproject.org/support# The URL linked by the "How to Cite Galaxy" link in the "Help" menu.#citation_url: https://galaxyproject.org/citing-galaxy# The URL linked by the "Search" link in the "Help" menu.#search_url: https://galaxyproject.org/search/# The URL linked by the "Mailing Lists" link in the "Help" menu.#mailing_lists_url: https://galaxyproject.org/mailing-lists# The URL linked by the "Videos" link in the "Help" menu.#screencasts_url: https://vimeo.com/galaxyproject# The URL linked by the "Terms and Conditions" link in the "Help" menu, as well# as on the user registration and login forms and in the activation emails.#terms_url: None
We use SCSS to build our CSS. Among other features it allows defining variables.
--- a/client/galaxy/style/scss/theme/blue.scss+++ b/client/galaxy/style/scss/theme/blue.scss@@ -2,7 +2,7 @@-@base-color-1: #2c3143;+@base-color-1: blue;
Customizing the welcome page is quite easy, just edit $GALAXY_ROOT/static/welcome.html
Embedding twitter feeds is popular, e.g. usegalaxy.org
Customizing the welcome page is quite easy, just edit $GALAXY_ROOT/static/welcome.html
Embedding twitter feeds is popular, e.g. usegalaxy.org
IFrame to embed a blog hosted on the same domain
<!-- Header --><h3>News</h3><!-- Iframe contents go here --><div id="test-rss"></div><!-- Load JQuery --><script src="https://fqdn/galaxy/static/scripts/libs/jquery/jquery.js"></script><!-- Load contents into div --><script type="text/javascript">$('#test-rss').load('https://fqdn/category/dev/ #content');</script>
# -- ToolBox filtering# Modules from lib/galaxy/tools/toolbox/filters/ can be specified in# the following lines. tool_* filters will be applied for all users# and can not be changed by them. user_tool_* filters will be shown# under user preferences and can be toggled on and off at# runtime. Example shown below are not real defaults (no custom# filters are applied by default), but can be enabled by renaming the# examples.py.sample in the filters directory to examples.py.#tool_filters =#tool_label_filters =#tool_section_filters =#user_tool_filters: examples:restrict_upload_to_admins, examples:restrict_encode#user_tool_section_filters: examples:restrict_text#user_tool_label_filters: examples:restrict_upload_to_admins, examples:restrict_encode# The base modules that are searched for modules as described above# can be modified and modules external to Galaxy can be searched by# modifying the following option.#toolbox_filter_base_modules: galaxy.tools.toolbox.filters,galaxy.tools.filters
Used to control user disk usage.
To turn on the use of quotas: In galaxy.yml
:
enable_quotas
Enable enforcement of quotas. Quotas can be set from the Admin interface (under Data).Amounts:
Default for user class:
or associated with Groups or Users
This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors!
Author(s) |
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Reviewers |
|
Tutorial Content is licensed under Creative Commons Attribution 4.0 International License.
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