Saskia Hiltemann
Contributions
Researcher at Erasmus Medical Center
Tutorials
- Metagenomics / Analyses of metagenomics data - The global picture
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data
- Metagenomics / Antibiotic resistance detection
- Metagenomics / 16S Microbial Analysis with mothur (extended)
- Metagenomics / Metatranscriptomics analysis using microbiome RNA-seq data (short)
- Metagenomics / 16S Microbial Analysis with mothur (short)
- Galaxy Server administration / Ansible
- Galaxy Server administration / Galaxy Installation with Ansible
- Galaxy Server administration / Data Libraries
- Galaxy Server administration / Training Infrastructure as a Service (TIaaS)
- Teaching and Hosting Galaxy training / Set up a Galaxy for Training
- Teaching and Hosting Galaxy training / Running a workshop as instructor
- Imaging / Introduction to image analysis using Galaxy
- Introduction to Galaxy Analyses / Galaxy 101 for everyone
- Introduction to Galaxy Analyses / Galaxy 101
- Development in Galaxy / JavaScript plugins
- Development in Galaxy / Generic plugins
- Development in Galaxy / Data source integration
- Visualisation / Visualisation with Circos
- Visualisation / Genomic Data Visualisation with JBrowse
- Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
- Contributing to the Galaxy Training Material / Running the GTN website online using GitPod
- Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
- Contributing to the Galaxy Training Material / Creating a new tutorial
- Contributing to the Galaxy Training Material / Creating content in Markdown
- Contributing to the Galaxy Training Material / Running the GTN website locally
- Assembly / Genome Assembly of MRSA using Illumina MiSeq Data
- Assembly / De Bruijn Graph Assembly
- Assembly / Genome Assembly of MRSA using Oxford Nanopore MinION Data
Slides
- Metagenomics / Introduction to metagenomics
- Introduction to Galaxy Analyses / Introduction to Galaxy
- Visualisation / Visualisations in Galaxy
- Metagenomics / Introduction to metatranscriptomics
- Galaxy Server administration / Empathy
- Galaxy Server administration / Storage Management
- Sequence analysis / Mapping
- Teaching and Hosting Galaxy training / Workshop Kickoff
- Introduction to Galaxy Analyses / A Short Introduction to Galaxy
- Development in Galaxy / Tool development and integration into Galaxy
- Development in Galaxy / Visualizations: JavaScript Plugins
- Development in Galaxy / Galaxy Interactive Environments
- Development in Galaxy / Generic plugins
- Using Galaxy and Managing your Data / Getting data into Galaxy
- Visualisation / Circos
- Visualisation / JBrowse
- Contributing to the Galaxy Training Material / Creating Slides