17 January 2024
| Author(s) |
Julia Jakiela 
Morgan Howells
Wendi Bacon
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New single cell section: Changing data formats & preparing objects
Full StoryJulia Jakiela
Contributions
The following list includes only slides and tutorials where the individual has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
GitHub Activity
Tutorials
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Imaging
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Hands-on: Hands-on: FAIR Bioimage Metadata
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Imaging
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Hands-on: Hands-on: REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
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FAIR Data, Workflows, and Research
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Hands-on: Hands-on: Data management in Medicinal Chemistry
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FAIR Data, Workflows, and Research
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Hands-on: Hands-on: FAIR Bioimage Metadata
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FAIR Data, Workflows, and Research
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Hands-on: Hands-on: REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
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Computational chemistry
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Hands-on: Hands-on: Data management in Medicinal Chemistry
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Single Cell
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Hands-on: Hands-on: Inferring single cell trajectories (Scanpy)
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Single Cell
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Hands-on: Hands-on: Inferring single cell trajectories (Monocle3, R)
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Single Cell
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Hands-on: Hands-on: Importing files from public atlases
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Single Cell
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Hands-on: Hands-on: Hands-on: Hands-on: Combining single cell datasets after pre-processing
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Single Cell
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Hands-on: Hands-on: Inferring single cell trajectories (Monocle3)
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Single Cell
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Hands-on: Hands-on: Hands-on: Hands-on: Filter, plot and explore single-cell RNA-seq data (Scanpy)
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Single Cell
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Hands-on: Hands-on: Hands-on: Hands-on: Filter, plot and explore single-cell RNA-seq data (Scanpy)
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Single Cell
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Hands-on: Hands-on: Inferring single cell trajectories (Scanpy, Python)
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Single Cell
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Hands-on: Hands-on: Scanpy Parameter Iterator
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Single Cell
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Hands-on: Hands-on: Hands-on: Hands-on: Generating a single cell matrix using Alevin
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Single Cell
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Hands-on: Hands-on: Converting between common single cell data formats
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Single Cell
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Hands-on: Hands-on: Generating a single cell matrix using Alevin and combining datasets (bash + R)
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Slides
News
single cell
data management
data import
fair
18 December 2023
Author(s)
Julia Jakiela
computational chemistry
user story
gtn
As a medicinal chemistry student, I undertook a semester project on natural products isolation and derivatisation. One of the compounds my group was working on was piperine, extracted from black pepper. Inspired by literature findings, we found out that the derivatives of piperine can inhibit monoamine oxidase-B and thus can be possibly used in Parkinson’s disease. As a novelty element in our project, we came up with new structures of derivatives that could act as inhibitors.
Full Story
18 December 2023
| Author(s) |
Julia Jakiela
|
As a medicinal chemistry student, I undertook a semester project on natural products isolation and derivatisation. One of the compounds my group was working on was piperine, extracted from black pepper. Inspired by literature findings, we found out that the derivatives of piperine can inhibit monoamine oxidase-B and thus can be possibly used in Parkinson’s disease. As a novelty element in our project, we came up with new structures of derivatives that could act as inhibitors.
Full Story