Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Mélanie Petera avatar Mélanie Peteraorcid logoBjörn Grüning avatar Björn Grüningorcid logoMatej Troják avatar Matej Trojákorcid logoKristina Gomoryova avatar Kristina GomoryovaJulien Saint-Vanne avatar Julien Saint-VanneMaren Stillger avatar Maren Stillgerorcid logoMelanie Föll avatar Melanie FöllWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamCécile Canlet avatar Cécile Canletorcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMaxim Skoryk avatar Maxim SkorykYann Guitton avatar Yann GuittonJean-François Martin avatar Jean-François MartinGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHelge Hecht avatar Helge Hechtorcid logoSaskia Hiltemann avatar Saskia HiltemannSimeon Schum avatar Simeon Schum

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR