Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Jean-François Martin avatar Jean-François Martinorcid logoMaxim Skoryk avatar Maxim SkorykJulien Saint-Vanne avatar Julien Saint-VanneSimeon Schum avatar Simeon SchumSimon Bray avatar Simon Brayorcid logoJulia Jakiela avatar Julia JakielaCécile Canlet avatar Cécile Canletorcid logoKristina Gomoryova avatar Kristina GomoryovaGildas Le Corguillé avatar Gildas Le CorguilléMaren Stillger avatar Maren Stillgerorcid logoMatej Troják avatar Matej Trojákorcid logoBjörn Grüning avatar Björn Grüningorcid logoMelanie Föll avatar Melanie Föllorcid logoSaskia Hiltemann avatar Saskia HiltemannYann Guitton avatar Yann Guittonorcid logoHelge Hecht avatar Helge HechtWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena RascheMélanie Petera avatar Mélanie Petera

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe