Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoMatej Troják avatar Matej Trojákorcid logoHelena Rasche avatar Helena RascheJean-François Martin avatar Jean-François MartinJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoMelanie Föll avatar Melanie FöllYann Guitton avatar Yann Guittonorcid logoHelge Hecht avatar Helge HechtSimon Bray avatar Simon BrayMélanie Petera avatar Mélanie PeteraCécile Canlet avatar Cécile Canletorcid logoBérénice Batut avatar Bérénice BatutSimeon Schum avatar Simeon SchumMaren Stillger avatar Maren Stillgerorcid logoJulia Jakiela avatar Julia JakielaWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKristina Gomoryova avatar Kristina Gomoryova

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe