Posted on: 17 January 2024 purlPURL: https://gxy.io/GTN:N00070

New single cell section: Changing data formats & preparing objects

Now a nightmare of switching between single cell datatypes or importing the data is gone! With the new section on Changing data formats & preparing objects, the users can now confidently jump into the analysis. Some of those tutorials were created in the framework of ELIXIR-UK: FAIR Data Stewardship training, which aims to improve Findable Accessible Interoperable Reusable (FAIR) data management in the life sciences.

We have developed the following tutorials:

• Converting between common single cell data formats
• Importing files for single cell analysis from public atlases
• Converting NCBI Data to the AnnData Format
• Creating a single-cell RNA-seq reference dataset for deconvolution
• Creating the bulk RNA-seq dataset for deconvolution

Where can I learn more?

You can find out more about the FAIR Data Stewardship training on the ELIXIR-UK Fellowship site. Also, keep an eye on the upcoming live trainings!

Funding

These organisations or grants provided funding support for the development of this resource

DASH UK

This Fellowship was funded through the ELIXIR-UK DaSH project as part of the UKRI Innovation Scholars: Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1). The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources.