Posted on: 17 January 2024 purlPURL: https://gxy.io/GTN:N00070

New single cell section: Changing data formats & preparing objects

Now a nightmare of switching between single cell datatypes or importing the data is gone! With the new section on Changing data formats & preparing objects, the users can now confidently jump into the analysis. Some of those tutorials were created in the framework of ELIXIR-UK: FAIR Data Stewardship training, which aims to improve Findable Accessible Interoperable Reusable (FAIR) data management in the life sciences.

We have developed the following tutorials:

• Converting between common single cell data formats
• Importing files for single cell analysis from public atlases
• Converting NCBI Data to the AnnData Format
• Creating a single-cell RNA-seq reference dataset for deconvolution
• Creating the bulk RNA-seq dataset for deconvolution

Where can I learn more?

You can find out more about the FAIR Data Stewardship training on the ELIXIR-UK Fellowship site. Also, keep an eye on the upcoming live trainings!