Plants
Set of tutorials from various topics that use plant datasets for analysis
For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney
Saskia Hiltemann
Contributors
This material was contributed to by:
Fabian Recktenwald
Deepti Varshney
Mehmet Tekman
Beatriz Serrano-Solano
Pavankumar Videm
Cristóbal Gallardo
Anna Syme
Tom Brown
Esteban Perez-Wohlfeil
Funding
These individuals or organisations provided funding support for the development of this resource
