These workflows are associated with 16S Microbial analysis with Nanopore data

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Training: 16S rRNA Analysis with Nanopore Sequencing Reads

Last updated Jan 11, 2024

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Tests: ❌ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Collection\nInput dataset collection"];
  style 0 stroke:#2c3143,stroke-width:4px;
  0 -->|output| 1;
  0 -->|output| 2;
  1 -->|text_file| 3;
  2 -->|outfile| 4;
  4 -->|out1| 5;
  4 -->|out1| 6;
  5 -->|text_file| 7;
  6 -->|report_output| 8;
  9["Replace Text"];
  8 -->|out_file| 9;
  10["Remove beginning"];
  9 -->|outfile| 10;
  11["Krona pie chart"];
  10 -->|out_file1| 11;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: