The website with the training material can be run locally. Sometimes, it is also interesting to freeze the tutorials or to get PDFs of the tutorials.

Agenda

In this tutorial, you will learn how to run a local instance of the GTN website:

1. Generate PDFs artifact

Generate PDFs artifact

To generate the PDFs, a command make pdf is given. This command:

• Launches a detached Jekyll server to serve the website
• Generates the PDFs of the tutorials by calling Chrome via command line
• Generates the PDFs of the slide decks by calling decktape

Hands-on: Checking the website generation locally

1. Install a browser
2. Generate the PDFs: make pdf
3. Check the generated PDFs in _pdf folder

You've Finished the Tutorial

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Key points

• PDFs can be easily generated for the different tutorials to share with learnees or to keep a fixed version of a tutorial

Frequently Asked Questions

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Citing this Tutorial

1. Bérénice Batut, Generating PDF artefacts of the website (Galaxy Training Materials). https://training.galaxyproject.org/training-material/topics/contributing/tutorials/generating-pdf/tutorial.html Online; accessed TODAY
2. Hiltemann, Saskia, Rasche, Helena et al., 2023 Galaxy Training: A Powerful Framework for Teaching! PLOS Computational Biology 10.1371/journal.pcbi.1010752
3. Batut et al., 2018 Community-Driven Data Analysis Training for Biology Cell Systems 10.1016/j.cels.2018.05.012

BibTeX

@misc{contributing-generating-pdf,
author = "Bérénice Batut",
	title = "Generating PDF artefacts of the website (Galaxy Training Materials)",
	year = "",
	month = "",
	day = "",
	url = "\url{https://training.galaxyproject.org/training-material/topics/contributing/tutorials/generating-pdf/tutorial.html}",
	note = "[Online; accessed TODAY]"
}
@article{Hiltemann_2023,
	doi = {10.1371/journal.pcbi.1010752},
	url = {https://doi.org/10.1371%2Fjournal.pcbi.1010752},
	year = 2023,
	month = {jan},
	publisher = {Public Library of Science ({PLoS})},
	volume = {19},
	number = {1},
	pages = {e1010752},
	author = {Saskia Hiltemann and Helena Rasche and Simon Gladman and Hans-Rudolf Hotz and Delphine Larivi{\`{e}}re and Daniel Blankenberg and Pratik D. Jagtap and Thomas Wollmann and Anthony Bretaudeau and Nadia Gou{\'{e}} and Timothy J. Griffin and Coline Royaux and Yvan Le Bras and Subina Mehta and Anna Syme and Frederik Coppens and Bert Droesbeke and Nicola Soranzo and Wendi Bacon and Fotis Psomopoulos and Crist{\'{o}}bal Gallardo-Alba and John Davis and Melanie Christine Föll and Matthias Fahrner and Maria A. Doyle and Beatriz Serrano-Solano and Anne Claire Fouilloux and Peter van Heusden and Wolfgang Maier and Dave Clements and Florian Heyl and Björn Grüning and B{\'{e}}r{\'{e}}nice Batut and},
	editor = {Francis Ouellette},
	title = {Galaxy Training: A powerful framework for teaching!},
	journal = {PLoS Comput Biol}
}

                   

Developing GTN training material

This tutorial is part of a series to develop GTN training material, feel free to also look at:

1. Contributing with GitHub via command-line
2. Overview of the Galaxy Training Material
3. Creating Interactive Galaxy Tours
4. Contributing with GitHub via its interface
5. Generating PDF artefacts of the website
6. Tools, Data, and Workflows for tutorials
7. Teaching Python
8. Running the GTN website online using GitHub CodeSpaces
9. Design and plan session, course, materials
10. GTN Metadata
11. Running the GTN website online using GitPod
12. Adding auto-generated video to your slides
13. Including a new topic
14. Adding Quizzes to your Tutorial
15. Principles of learning and how they apply to training and teaching
16. Updating diffs in admin training
17. Running the GTN website locally using the command line
18. Creating a new tutorial
19. Single Cell Publication - Data Plotting
20. FAIR Galaxy Training Material
21. Single Cell Publication - Data Analysis
22. Creating content in Markdown
23. Creating Slides
24. Updating tool versions in a tutorial

Galaxy Administrators: Install the missing tools

You can use Ephemeris's shed-tools install command to install the tools used in this tutorial.

shed-tools install [-g GALAXY] [-a API_KEY] -t <(curl https://training.galaxyproject.org/training-material/api/topics/contributing/tutorials/generating-pdf/tutorial.json | jq .admin_install_yaml -r)

Alternatively you can copy and paste the following YAML

---
install_tool_dependencies: true
install_repository_dependencies: true
install_resolver_dependencies: true
tools: []

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