Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

Anup Kumar avatar Anup Kumarorcid logoHelena Rasche avatar Helena Rascheorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoClea Siguret avatar Clea Siguretorcid logoErwan Corre avatar Erwan CorreElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick Tanorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningAva Hoffman avatar Ava Hoffmanorcid logoMateo Boudet avatar Mateo BoudetWilliam Durand avatar William DurandCandace Savonen avatar Candace SavonenElizabeth Humphries avatar Elizabeth HumphriesSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola SoranzoKatherine Cox avatar Katherine Coxorcid logoLaura Leroi avatar Laura LeroiJoachim Wolff avatar Joachim Wolfforcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoWolfgang Maier avatar Wolfgang MaierVerena Moosmann avatar Verena MoosmannRobert Meller avatar Robert Mellerorcid logoColine Royaux avatar Coline Royauxorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMaria Doyle avatar Maria Doyleorcid logoDeepti Varshney avatar Deepti VarshneyNatalie Kucher avatar Natalie Kucherorcid logoCameron Hyde avatar Cameron HydeMatthias Bernt avatar Matthias BerntSimon Bray avatar Simon Brayorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa Müllerorcid logoAlexandre Cormier avatar Alexandre CormierEric Tvedte avatar Eric Tvedte

Funding

These individuals or organisations provided funding support for the development of this resource

References