Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoAlexandre Cormier avatar Alexandre CormierCandace Savonen avatar Candace Savonenorcid logoBérénice Batut avatar Bérénice BatutElizabeth Humphries avatar Elizabeth Humphriesorcid logoTeresa Müller avatar Teresa Müllerorcid logoHelena Rasche avatar Helena RascheEric Tvedte avatar Eric Tvedteorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMateo Boudet avatar Mateo BoudetElischa Berger avatar Elischa BergerSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal GallardoAnup Kumar avatar Anup KumarRobert Meller avatar Robert MellerWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia HiltemannJoachim Wolff avatar Joachim WolffNatalie Kucher avatar Natalie Kucherorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoLaura Leroi avatar Laura Leroiorcid logoClea Siguret avatar Clea SiguretAva Hoffman avatar Ava Hoffmanorcid logoErwan Corre avatar Erwan CorreMatthias Bernt avatar Matthias Berntorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMaria Doyle avatar Maria DoyleVerena Moosmann avatar Verena Moosmannorcid logoColine Royaux avatar Coline Royauxorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnne Fouilloux avatar Anne FouillouxSimon Bray avatar Simon BrayFrederick Tan avatar Frederick TanKatherine Cox avatar Katherine Cox

Funding

These individuals or organisations provided funding support for the development of this resource

References