Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice Batutorcid logoCameron Hyde avatar Cameron Hydeorcid logoWolfgang Maier avatar Wolfgang MaierElischa Berger avatar Elischa Bergerorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoColine Royaux avatar Coline RoyauxWilliam Durand avatar William Durandorcid logoErwan Corre avatar Erwan Correorcid logoHelena Rasche avatar Helena Rascheorcid logoClea Siguret avatar Clea SiguretAnup Kumar avatar Anup KumarJoachim Wolff avatar Joachim WolffKatherine Cox avatar Katherine Coxorcid logoMaria Doyle avatar Maria DoyleCandace Savonen avatar Candace Savonenorcid logoCristóbal Gallardo avatar Cristóbal GallardoNatalie Kucher avatar Natalie KucherRobert Meller avatar Robert Mellerorcid logoLaura Leroi avatar Laura LeroiEric Tvedte avatar Eric TvedteDeepti Varshney avatar Deepti Varshneyorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika ErxlebenTeresa Müller avatar Teresa MüllerVerena Moosmann avatar Verena MoosmannMatthias Bernt avatar Matthias BerntAva Hoffman avatar Ava Hoffmanorcid logoSaskia Hiltemann avatar Saskia HiltemannElizabeth Humphries avatar Elizabeth Humphriesorcid logoBjörn Grüning avatar Björn Grüningorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoMateo Boudet avatar Mateo Boudetorcid logoAnne Fouilloux avatar Anne FouillouxSwathi Nataraj avatar Swathi NatarajSimon Bray avatar Simon BrayFrederick Tan avatar Frederick Tan

Funding

These individuals or organisations provided funding support for the development of this resource

References