Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

Robert Meller avatar Robert Mellerorcid logoClea Siguret avatar Clea Siguretorcid logoStéphanie Robin avatar Stéphanie RobinFrederick Tan avatar Frederick TanKatherine Cox avatar Katherine CoxAnup Kumar avatar Anup KumarNatalie Kucher avatar Natalie KucherAva Hoffman avatar Ava HoffmanSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoLaura Leroi avatar Laura LeroiWilliam Durand avatar William DurandEric Tvedte avatar Eric TvedteVerena Moosmann avatar Verena Moosmannorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias BerntSwathi Nataraj avatar Swathi Natarajorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnne Fouilloux avatar Anne FouillouxCandace Savonen avatar Candace Savonenorcid logoWolfgang Maier avatar Wolfgang MaierElischa Berger avatar Elischa Bergerorcid logoMateo Boudet avatar Mateo Boudetorcid logoMaria Doyle avatar Maria Doyleorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoColine Royaux avatar Coline RoyauxJoachim Wolff avatar Joachim Wolfforcid logoNicola Soranzo avatar Nicola Soranzoorcid logoErwan Corre avatar Erwan Correorcid logoBjörn Grüning avatar Björn GrüningElizabeth Humphries avatar Elizabeth Humphriesorcid logoCameron Hyde avatar Cameron Hydeorcid logoTeresa Müller avatar Teresa Müllerorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

References