Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates rss-feed with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William Durandorcid logoColine Royaux avatar Coline Royauxorcid logoMateo Boudet avatar Mateo Boudetorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAnika Erxleben avatar Anika ErxlebenSwathi Nataraj avatar Swathi NatarajKatherine Cox avatar Katherine CoxElischa Berger avatar Elischa BergerVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert Mellerorcid logoDeepti Varshney avatar Deepti VarshneyAva Hoffman avatar Ava HoffmanCandace Savonen avatar Candace Savonenorcid logoHelena Rasche avatar Helena RascheMatthias Bernt avatar Matthias BerntAnup Kumar avatar Anup KumarEric Tvedte avatar Eric Tvedteorcid logoTeresa Müller avatar Teresa Müllerorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoLaura Leroi avatar Laura LeroiElizabeth Humphries avatar Elizabeth Humphriesorcid logoSaskia Hiltemann avatar Saskia HiltemannSimon Bray avatar Simon BrayNatalie Kucher avatar Natalie Kucherorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoClea Siguret avatar Clea Siguretorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoBjörn Grüning avatar Björn GrüningFrederick Tan avatar Frederick Tanorcid logoBérénice Batut avatar Bérénice Batutorcid logoCameron Hyde avatar Cameron HydeJoachim Wolff avatar Joachim Wolfforcid logoErwan Corre avatar Erwan Corre

Funding

These individuals or organisations provided funding support for the development of this resource

References