Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

Candace Savonen avatar Candace SavonenKatherine Cox avatar Katherine Coxorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCristóbal Gallardo avatar Cristóbal GallardoVerena Moosmann avatar Verena Moosmannorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoClea Siguret avatar Clea SiguretRobert Meller avatar Robert Mellerorcid logoBérénice Batut avatar Bérénice Batutorcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria DoyleMatthias Bernt avatar Matthias BerntAva Hoffman avatar Ava HoffmanNatalie Kucher avatar Natalie Kucherorcid logoHelena Rasche avatar Helena RascheWilliam Durand avatar William Durandorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoColine Royaux avatar Coline Royauxorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika ErxlebenFrederick Tan avatar Frederick Tanorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAlexandre Cormier avatar Alexandre CormierEric Tvedte avatar Eric TvedteElischa Berger avatar Elischa BergerSimon Bray avatar Simon BrayJoachim Wolff avatar Joachim Wolfforcid logoErwan Corre avatar Erwan Correorcid logoMateo Boudet avatar Mateo Boudetorcid logoBjörn Grüning avatar Björn GrüningSwathi Nataraj avatar Swathi Natarajorcid logoLaura Leroi avatar Laura LeroiElizabeth Humphries avatar Elizabeth Humphriesorcid logoSaskia Hiltemann avatar Saskia HiltemannAnup Kumar avatar Anup Kumar

Funding

These individuals or organisations provided funding support for the development of this resource

References