Sequence analysis — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Yvan Le Bras Bérénice Batut Joachim Wolff

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	Done ✅ (3 members)	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Done ✅	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (7 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Mapping	❌	✅	✅	✅	❌	View
Quality Control	✅	❌	✅	✅	❌	View
Clean and manage Sanger sequences from raw files to aligned consensus	❌	❌	❌	✅	❌	View
NCBI BLAST+ against the MAdLand	✅	❌	❌	✅	❌	View
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	✅	❌	❌	✅	❌	View
Removal of human reads from SARS-CoV-2 sequencing data	❌	✅	❌	✅	❌	View
SARS-CoV-2 Viral Sample Alignment and Variant Visualization	✅	❌	❌	✅	❌	View
Screening assembled genomes for contamination using NCBI FCS	✅	❌	❌	✅	❌	View

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Mapping	GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file)	Dec 21, 2024	5	❌	❌	❌
Mapping	GTN - Sequence Analyses - Mapping (imported from uploaded file)	Dec 21, 2024	4	✅	❌	❌
Quality Control	GTN - Sequence Analyses - Quality Control (imported from uploaded file)	Dec 21, 2024	5	✅	❌	❌
Clean and manage Sanger sequences from raw files to aligned consensus	Sanger1 : From AB1 to aligned consensus and primers fasta + BLAST	Dec 21, 2024	1	✅	❌	❌
Clean and manage Sanger sequences from raw files to aligned consensus	Training Sanger sequences CHD8	Dec 21, 2024	1	✅	❌	❌
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Dec 21, 2024	1	✅	❌	❌
Removal of human reads from SARS-CoV-2 sequencing data	GTN - Sequence Analyses - Removal of human reads from SARS-CoV-2 sequencing data	Dec 21, 2024	1	❌	❌	❌
Screening assembled genomes for contamination using NCBI FCS	NCBI Foreign Contamination Screen	Dec 21, 2024	1	✅	❌	❌

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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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