Using Galaxy and Managing your Data
A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Uploading Data
These tutorials will help you get data into Galaxy, before you analyse it.
Lesson | Slides | Hands-on | Recordings |
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Getting data into Galaxy
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Rule Based Uploader | |||
Rule Based Uploader: Advanced | |||
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
Histories
Managing your analysis histories efficiently
Lesson | Slides | Hands-on | Recordings |
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Searching Your History
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Understanding Galaxy history system
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Making Data Manageable
Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.
Lesson | Slides | Hands-on | Recordings |
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Group tags for complex experimental designs
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Multisample Analysis | |||
Name tags for following complex histories
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Using dataset collections |
Workflows
Using Galaxy workflows to scale analysis
Analysing Data
Some advanced topics in data analysis.
Lesson | Slides | Hands-on | Recordings |
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InterMine integration with Galaxy | |||
JupyterLab in Galaxy | |||
RStudio in Galaxy | |||
Use Jupyter notebooks in Galaxy
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Download and free up space
Once you are done with your analyses in Galaxy, it's time to download your data and free up space.
Lesson | Slides | Hands-on | Recordings |
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Downloading and Deleting Data in Galaxy
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Other
Assorted Tutorials
Lesson | Slides | Hands-on | Recordings |
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Submitting sequence data to ENA |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson Helena RascheContributors
This material was contributed to by:
Simon Bray Charles Overbeck Boris Depoortere Laila Los Ekaterina Polkh Anne Fouilloux Elizabeth Sheets John Chilton Adelaide Rhodes Fotis E. Psomopoulos Martin Čech Jon Trow Delphine Lariviere Enis Afgan Simon Gladman Cristóbal Gallardo Bert Droesbeke Björn Grüning Daniela Butano Dave Clements Anne Pajon Anton Nekrutenko Bérénice Batut Wolfgang Maier Miguel Roncoroni Avani Khadilkar Toby Hodges Saskia Hiltemann Yo Yehudi Aysam Guerler Ahmed Hamid Awan Helena Rasche Maria Doyle Marius van den BeekFunding
These individuals or organisations provided funding support for the development of this resource