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Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2

Contributors

AvatarJon Trow

Questions

Objectives

last_modification Last modification: Jun 2, 2021

Why have SRA data in the cloud?


What data is in scope for this training?

Introduction to SRA aligned read format and associated metadata


Using aligned read format

.pull-left[

.pull-right[ graph with one large node of SRA aligned reads leading to three other nodes: FASTQ, SAM, Fasta contigs (new). ]


Accessing SRA metadata in the cloud


Available SRA metadata

SRA aligned read metadata:



SRA data in the cloud

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.pull-right[ .image-100[screenshot of google cloud ncbi covid-19 project website. ] .image-100[screenshot of aws ncbi covid-19 project website. ] ]


Key Points

Thank you!

This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors! page logo This material is licensed under the Creative Commons Attribution 4.0 International License.