Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

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Contributors

This material was contributed to by:

orcid logoJohn Chilton avatar John Chiltonorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoClemens Blank avatar Clemens BlankNiall Beard avatar Niall Beardorcid logoJohan Gustafsson avatar Johan GustafssonNitesh Turaga avatar Nitesh TuragaDave B. avatar Dave B.Simon Bray avatar Simon Brayorcid logoAlex Ostrovsky avatar Alex OstrovskyHervé Ménager avatar Hervé MénagerMarie Josse avatar Marie JosseErik Schill avatar Erik Schillorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBjörn Grüning avatar Björn GrüningYouri Hoogstrate avatar Youri HoogstrateCyril Monjeaud avatar Cyril MonjeaudStéphanie Legras avatar Stéphanie LegrasWilliam Durand avatar William Durandorcid logoNicola Soranzo avatar Nicola SoranzoClare Sloggett avatar Clare SloggettMatthias Bernt avatar Matthias BerntLoraine Guéguen avatar Loraine GuéguenEstelle Ancelet avatar Estelle Anceletorcid logoJohn Davis avatar John DavisRoss Lazarus avatar Ross Lazarusorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoArmin Dadras avatar Armin Dadrasorcid logoŁukasz Opioła avatar Łukasz OpiołaGildas Le Corguillé avatar Gildas Le CorguilléAssunta DeSanto avatar Assunta DeSantoorcid logoNate Coraor avatar Nate Coraororcid logoCameron Hyde avatar Cameron Hydeorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi Baconorcid logoPaul Zierep avatar Paul Ziereporcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMartin Čech avatar Martin ČechAysam Guerler avatar Aysam GuerlerDannon Baker avatar Dannon BakerLain Pavot avatar Lain Pavot

Funding

These individuals or organisations provided funding support for the development of this resource