Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

Assunta DeSanto avatar Assunta DeSantoorcid logoAlex Ostrovsky avatar Alex OstrovskyLoraine Guéguen avatar Loraine GuéguenMatthias Bernt avatar Matthias Berntorcid logoJohn Davis avatar John DavisClare Sloggett avatar Clare SloggettSimon Bray avatar Simon Brayorcid logoJohn Chilton avatar John ChiltonDannon Baker avatar Dannon Bakerorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoYvan Le Bras avatar Yvan Le BrasStéphanie Legras avatar Stéphanie Legrasorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoPaul Zierep avatar Paul Ziereporcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi BaconNitesh Turaga avatar Nitesh TuragaEstelle Ancelet avatar Estelle Anceletorcid logoArmin Dadras avatar Armin DadrasDave B. avatar Dave B.orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice BatutLain Pavot avatar Lain Pavotorcid logoNate Coraor avatar Nate CoraorHervé Ménager avatar Hervé Ménagerorcid logoMartin Čech avatar Martin ČechAysam Guerler avatar Aysam GuerlerNiall Beard avatar Niall BeardGildas Le Corguillé avatar Gildas Le Corguilléorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoClemens Blank avatar Clemens BlankYouri Hoogstrate avatar Youri HoogstrateRoss Lazarus avatar Ross Lazarusorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCameron Hyde avatar Cameron HydeMarie Josse avatar Marie JosseErik Schill avatar Erik SchillWilliam Durand avatar William Durandorcid logoBjörn Grüning avatar Björn GrüningCyril Monjeaud avatar Cyril Monjeaud

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
ELIXIR Europe
Logo
de.NBI
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
UFR