Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

Youri Hoogstrate avatar Youri Hoogstrateorcid logoBérénice Batut avatar Bérénice BatutLoraine Guéguen avatar Loraine Guéguenorcid logoMartin Čech avatar Martin ČechDave B. avatar Dave B.Assunta DeSanto avatar Assunta DeSantoorcid logoArmin Dadras avatar Armin Dadrasorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoNicola Soranzo avatar Nicola SoranzoCyril Monjeaud avatar Cyril MonjeaudEstelle Ancelet avatar Estelle AnceletWilliam Durand avatar William Durandorcid logoJohan Gustafsson avatar Johan GustafssonGildas Le Corguillé avatar Gildas Le CorguilléAysam Guerler avatar Aysam Guerlerorcid logoClemens Blank avatar Clemens Blankorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoHelena Rasche avatar Helena RascheMatthias Bernt avatar Matthias Berntorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNate Coraor avatar Nate Coraororcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoPaul Zierep avatar Paul Ziereporcid logoCameron Hyde avatar Cameron HydeLain Pavot avatar Lain PavotRoss Lazarus avatar Ross Lazarusorcid logoYvan Le Bras avatar Yvan Le BrasStéphanie Legras avatar Stéphanie LegrasMarie Josse avatar Marie JosseClare Sloggett avatar Clare Sloggettorcid logoJohn Chilton avatar John Chiltonorcid logoBjörn Grüning avatar Björn GrüningNitesh Turaga avatar Nitesh Turagaorcid logoJohn Davis avatar John DavisDannon Baker avatar Dannon BakerHervé Ménager avatar Hervé MénagerErik Schill avatar Erik Schillorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruNiall Beard avatar Niall BeardSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource