Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Community Resources

Community Home Maintainer Home

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Hervé Ménager avatar Hervé Ménagerorcid logoHelena Rasche avatar Helena RascheClare Sloggett avatar Clare Sloggettorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoPaul Zierep avatar Paul Ziereporcid logoNicola Soranzo avatar Nicola Soranzoorcid logoNate Coraor avatar Nate CoraorAysam Guerler avatar Aysam GuerlerStéphanie Legras avatar Stéphanie LegrasDave B. avatar Dave B.Gildas Le Corguillé avatar Gildas Le CorguilléLain Pavot avatar Lain PavotNiall Beard avatar Niall BeardNitesh Turaga avatar Nitesh Turagaorcid logoBjörn Grüning avatar Björn Grüningorcid logoCristóbal Gallardo avatar Cristóbal GallardoMarie Josse avatar Marie Josseorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon Brayorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruDannon Baker avatar Dannon BakerAssunta DeSanto avatar Assunta DeSantoorcid logoArmin Dadras avatar Armin Dadrasorcid logoClemens Blank avatar Clemens BlankYouri Hoogstrate avatar Youri Hoogstrateorcid logoWendi Bacon avatar Wendi BaconWilliam Durand avatar William Durandorcid logoJohan Gustafsson avatar Johan GustafssonEstelle Ancelet avatar Estelle AnceletMatthias Bernt avatar Matthias BerntRoss Lazarus avatar Ross Lazarusorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoBérénice Batut avatar Bérénice Batutorcid logoJohn Davis avatar John DavisLoraine Guéguen avatar Loraine Guéguenorcid logoMartin Čech avatar Martin ČechCyril Monjeaud avatar Cyril Monjeaudorcid logoJohn Chilton avatar John ChiltonErik Schill avatar Erik Schillorcid logoCameron Hyde avatar Cameron Hyde

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
UFR
Logo
de.NBI
Logo
ELIXIR Europe
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.