Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance
storage

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

Dave B. avatar Dave B.Matthias Bernt avatar Matthias BerntHervé Ménager avatar Hervé Ménagerorcid logoBérénice Batut avatar Bérénice BatutCyril Monjeaud avatar Cyril Monjeaudorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSaskia Hiltemann avatar Saskia HiltemannErik Schill avatar Erik Schillorcid logoNate Coraor avatar Nate CoraorLain Pavot avatar Lain PavotYouri Hoogstrate avatar Youri Hoogstrateorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnthony Bretaudeau avatar Anthony BretaudeauClare Sloggett avatar Clare Sloggettorcid logoCameron Hyde avatar Cameron Hydeorcid logoHelena Rasche avatar Helena RascheMarie Josse avatar Marie Josseorcid logoYvan Le Bras avatar Yvan Le BrasSimon Bray avatar Simon BrayDannon Baker avatar Dannon Bakerorcid logoWendi Bacon avatar Wendi Baconorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoPaul Zierep avatar Paul ZierepEstelle Ancelet avatar Estelle Anceletorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoClemens Blank avatar Clemens Blankorcid logoJohn Davis avatar John Davisorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoJohn Chilton avatar John ChiltonGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMartin Čech avatar Martin ČechRoss Lazarus avatar Ross LazarusStéphanie Legras avatar Stéphanie LegrasAysam Guerler avatar Aysam GuerlerNitesh Turaga avatar Nitesh TuragaLoraine Guéguen avatar Loraine GuéguenAssunta DeSanto avatar Assunta DeSanto

Funding

These individuals or organisations provided funding support for the development of this resource