Marie Josse

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

4 Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Topic: Earth Data Science
• Topic: Ecology
• Learning Pathway: Discovering Galaxy through climate analysis
• Learning Pathway: Tool development for a nice & shiny subdomain

62 Tutorials

• Galaxy Community Building / Creation of the labs in the different Galaxy instances for your community 🧐
• Galaxy Community Building / Creation of resources listing Galaxy workflow for your community 🧐
• Galaxy Community Building / Make your tools available on your subdomain ✍️ 🧐
• Galaxy Community Building / Creation of a Galaxy tutorial table for your community 🧐
• Galaxy Community Building / Creation of resources listing all the tools and their metadata relevant to your community 🧐
• Development in Galaxy / Galaxy Interactive Tools 📝 🧐
• FAIR Data, Workflows, and Research / Exporting Workflow Run RO-Crates from Galaxy 📝 🧐
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials 🧐
• Imaging / AI pipeline for annotating marine species (Project Moorev - Marine) 🧐
• Galaxy Server Administration / Adding file-sources to Galaxy ✍️
• Galaxy Server Administration / Create a subdomain for your community on UseGalaxy.eu ✍️ 🧐
• Ecology / Cleaning GBIF data using OpenRefine 🧐
• Ecology / Compute and analyze biodiversity metrics with PAMPA toolsuite 🧐
• Ecology / RAD-Seq Reference-based data analysis 🧐
• Ecology / Ecoregionalization workflow tutorial ⚙️
• Ecology / RAD-Seq de-novo data analysis 🧐
• Ecology / Life Traits Ecoregionalization workflow 🧐
• Ecology / Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS 🧐
• Ecology / Visualize EBV cube data with Panoply netCDF viewer ✍️ 🧐
• Ecology / Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities 🧐
• Ecology / Object detection with YOLO ⚙️ 🧐
• Ecology / QGIS Web Feature Services ✍️ 🧐
• Ecology / Obis marine indicators ✍️ 🧐
• Ecology / RAD-Seq to construct genetic maps 🧐
• Ecology / Marine Omics identifying biosynthetic gene clusters ✍️
• Ecology / Sentinel 2 biodiversity ✍️
• Ecology / Biodiversity data exploration ✍️
• Ecology / Taxonomic Analysis of eDNA 🧐
• Ecology / Champs blocs indicators ✍️ 🧐
• Ecology / Regional GAM 🧐
• Ecology / Species distribution modeling 🧐
• Ecology / SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos 🧐
• Ecology / Data submission using ENA upload Tool 🧐
• Ecology / Phylodiversity analysis quick tutorial 🧐
• Ecology / Metabarcoding/eDNA through Obitools 🧐
• Ecology / From NDVI data with OpenEO to time series visualisation with Holoviews ✍️ 🧐
• Earth Data Science / Ocean Data View (ODV) ✍️ 🧐
• Earth Data Science / Getting your hands-on earth data ✍️ 🧐
• Earth Data Science / Analyse Argo data ✍️ 🧐
• Earth Data Science / Ocean's variables study ✍️ 🧐
• Earth Data Science / 3Dtrees: From LiDAR point clouds to individual trees ✍️ 🧐
• Earth Data Science / Sentinel 5P data visualisation ✍️
• Earth Data Science / Nitrate DMQC for autonomous platforms such as Argo floats ✍️ 🧐
• Imaging / Pipeline d'annotation d'espèces marines par IA (Project Moorev - Marine) 🧐
• Ecology / Production d'indicateurs champs de bloc ✍️
• Ecology / SAM3 – Segmentation sémantique d'images et de vidéos via IA 🧐

1 Slide

• FAIR Data, Workflows, and Research / An earth-system RO-Crate ✍️

2 FAQs

• Creating a dataset collection with autobuild
• Running a workflow

Your Contributor Card

GitHub Activity

github Issues Reported

34 Merged Pull Requests

See all of the github Pull Requests and github Commits by Marie Josse.

• 3dtrees tutorial
  climate
• Category
  climate
• Update marie's affiliations
  template-and-tools
• Add kilian
  template-and-tools
• add letter a-e in text
  faqs

Reviewed 26 PRs

We love our community reviewing each other's work!

• Update kgerb contributor profile and cite the 3Dtrees.earth preprint
  template-and-tools
  climate
• 3dtrees tutorial
  climate
• Revise ENA submission tutorial content and structure
  ecology
• Add Annotation AI Pipeline tutorial (marine species — Project Moorev)
  imaging
• Update tutorial.md add subtopic
  ecology

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