Imaging

Image analysis using Galaxy

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Analyse HeLa fluorescence siRNA screen
HeLa
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
Introduction to Image Analysis using Galaxy
HeLa
Nucleoli segmentation and feature extraction using CellProfiler
Object tracking using CellProfiler
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
Tracking of mitochondria and capturing mitoflashes
bioimaging mitoflash mitochondria
FAIR Bioimage Metadata
fair data management bioimaging
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
fair data management bioimaging

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoThomas Wollmann avatar Thomas Wollmann

Contributors

This material was contributed to by:

Laura Cooper avatar Laura Cooperorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoCameron Watson avatar Cameron WatsonYi Sun avatar Yi Sunorcid logoHelena Rasche avatar Helena Rascheorcid logoThomas Wollmann avatar Thomas Wollmannorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoJulia Jakiela avatar Julia Jakielaorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoRiccardo Massei avatar Riccardo Masseiorcid logoAllison Creason avatar Allison Creasonorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoLeonid Kostrykin avatar Leonid KostrykinJean-Karim Hériché avatar Jean-Karim Hérichéorcid logoBjörn Grüning avatar Björn Grüning

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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NFDI4Bioimage
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DFG
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DASH UK
This Fellowship was funded through the ELIXIR-UK DaSH project as part of the UKRI Innovation Scholars: Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1). The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources.

References