Imaging — Editorial Board Home

This is a new, experimental "Editorial Board Home" for a given topic. It is intended to provide a single place for maintainers and editorial board members to find out key information about their topic and identify action items.

Editorial Board

Thomas Wollmann

Action Items

Item	Status	Why you should do this
Summary	Done ✅	Provide a sufficiently detailed summary of the topic to let learners know what they're learning about in this topic.
Sufficient Editorial Board Members	More required ❌	Having multiple people sharing the burden of being responsible for a specific topic can reduce board member burn-out in the long term.
Enable Subtopics	Pending ❌	Subtopics help organize the content and make it easier to navigate.
Annotate Funders	Done ✅ (4 funders)	By annotating the funders of your topic's materials, you make it easier to write your grant reports later
Learning Pathway CTA	Pending ❌	By providing a Learning Pathway CTA, we can help guide learners to the best resources for learning about this topic.

Topic Materials

Material	Contributions v2 help	Pre-requisites help	Follow up trainings	Data on Zenodo	Notebook	Server Compatibility
Analyse HeLa fluorescence siRNA screen	✅	✅	✅	✅	❌	View
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	✅	❌	❌	✅	❌	View
Introduction to Image Analysis using Galaxy	✅	❌	✅	✅	❌	View
Nucleoli segmentation and feature extraction using CellProfiler	✅	❌	❌	❌	❌	View
Object tracking using CellProfiler	✅	✅	❌	✅	❌	View
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy	✅	❌	❌	✅	❌	View
Tracking of mitochondria and capturing mitoflashes	✅	❌	❌	✅	❌	View
FAIR Bioimage Metadata	✅	✅	✅	❌	❌	View
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data	✅	✅	✅	❌	❌	View

Topic Workflows

Material	Workflow	Updated	Version	Tests	Reports	Comments
Analyse HeLa fluorescence siRNA screen	analyze_screen	Dec 21, 2024	6	✅	❌	❌
Analyse HeLa fluorescence siRNA screen	feature_extraction	Dec 21, 2024	6	✅	❌	❌
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	GTN_Exemplar_002_TMA_workflow	Dec 21, 2024	1	❌	❌	❌
Introduction to Image Analysis using Galaxy	Workflow constructed from Tutorial 'Introduction to Image Analysis using Galaxy'	Dec 21, 2024	6	✅	❌	❌
Nucleoli segmentation and feature extraction using CellProfiler	CP_pipeline_IDR_training	Dec 21, 2024	3	❌	❌	❌
Object tracking using CellProfiler	CP_object_tracking_example	Dec 21, 2024	1	❌	❌	❌
Tracking of mitochondria and capturing mitoflashes	Capturing mitoflashes	Dec 21, 2024	1	✅	✅	❌

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TODO once this is merged: https://github.com/galaxyproject/training-material/pull/4963

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