Does MaxQuant in Galaxy support TMT, iTRAQ, etc.?
Melanie FöllYes, iTRAQ 4 and 8 plex; TMT 2,6,8,10,11 plex; iodoTMT6plex
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{% snippet topics/proteomics/tutorials/maxquant-msstats-dda-lfq/faqs/tmt_itraq.md %}