Copy of PeptideDataAnalysis (imported from uploaded file)

Run Workflow in Galaxy

• Galaxy France
• Galaxy Australia
• Galaxy Main
• Galaxy Europe
• Import to another server (≥23.0+ only!)

flowchart TD
  0["PDAUG Peptide Data Access"];
  1["PDAUG TSVtoFASTA"];
  0 -->|output1| 1;
  2["PDAUG Peptide Sequence Analysis"];
  1 -->|output3| 2;
  1 -->|output2| 2;
  3["PDAUG Sequence Property Based Descriptors"];
  1 -->|output2| 3;
  4["PDAUG Sequence Property Based Descriptors"];
  1 -->|output3| 4;
  5["PDAUG Fisher’s Plot"];
  1 -->|output3| 5;
  1 -->|output2| 5;
  6["AMP"];
  3 -->|output1| 6;
  7["TMP"];
  4 -->|output1| 7;
  8["PDAUG Merge Dataframes"];
  6 -->|OutFile1| 8;
  7 -->|OutFile1| 8;
  9["PDAUG Basic Plots"];
  8 -->|output1| 9;

Inputs

Outputs

Tools

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Version History

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/peptide-library-data-analysis/workflows/PeptideDataAnalysis.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows