Intro_To_Deep_Learning

statistics-intro_deep_learning/intro-to-deep-learning

Author(s)

version Version
4
last_modification Last updated
Jan 26, 2021
license License
None Specified, defaults to CC-BY-4.0
galaxy-tags Tags
statistics
deeplearning
ml

Features

Tutorial
hands_on Introduction to deep learning

Workflow Testing
Tests: ❌
Results: Not yet automated
FAIRness purl PURL
https://gxy.io/GTN:W00226
RO-Crate logo with flask Download Workflow RO-Crate Workflowhub cloud with gears logo View on WorkflowHub
Launch in Tutorial Mode question
galaxy-download Download
flowchart TD
  0["ℹ️ Input Dataset\nX_test"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nX_train"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\ny_test"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["ℹ️ Input Dataset\ny_train"];
  style 3 stroke:#2c3143,stroke-width:4px;
  4["Create a deep learning model architecture"];
  5["Create deep learning model"];
  4 -->|outfile| 5;
  6["Deep learning training and evaluation"];
  5 -->|outfile| 6;
  1 -->|output| 6;
  3 -->|output| 6;
  7["Model Prediction"];
  6 -->|outfile_object| 7;
  6 -->|outfile_weights| 7;
  0 -->|output| 7;
  8["Machine Learning Visualization Extension"];
  7 -->|outfile_predict| 8;
  2 -->|output| 8;

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL

Version History

Version Commit Time Comments
4 662ff1625 2021-01-26 14:24:23 Fixed input data labels (they were one off)
3 6069e5afb 2021-01-25 19:32:14 Added label for input data.
2 3250de162 2021-01-23 16:10:38 Tagged the workflow and added a title.
1 55c3b30a5 2021-01-22 21:39:50 Added workflow to Deep Learning Tutorial

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/statistics/tutorials/intro_deep_learning/workflows/Intro_To_Deep_Learning.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows