The UMAP Plots errors out sometimes?

Try a different colour palette. For upstream code reasons, the default color palette sometimes causes the tool to error out.

• Under Plot attributes, do
  • “Colour map to use for continuous variables”: viridis
  • “Colors to use for plotting categorical annotation groups”: plasma

Still have questions?

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{% snippet  topics/single-cell/tutorials/scrna-scanpy-pbmc3k/faqs/umap_plot_errors.md %}

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