NDVI with OpenEO

ecology-ndvi_openeo/main-workflow

Author(s)
Marie Jossé
Version
1
Last updated
Jan 24, 2024
License
CC-BY-4.0
Tags

Features
Tutorial
From NDVI data with OpenEO to time series visualisation with Holoviews
Other workflows associated with this material
Workflow Testing
Tests: ❌
Results: Not yet automated
FAIRness PURL
https://gxy.io/GTN:W00051
RO-Crate logo with flask Download Workflow RO-Crate Workflowhub cloud with gears logo View on (Dev) WorkflowHub
Launch in Tutorial Mode
Download 
flowchart TD
  0["Copernicus Data Space Ecosystem"];
  1["Holoviz"];
  0 -->|output_collection| 1;

Inputs

Input Label

Outputs

From Output Label

Tools

Tool Links
interactive_tool_copernicus_notebook
interactive_tool_holoviz

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL

Version History

Version Commit Time Comments
6 c9e46f370 2024-01-15 15:17:05 fix license
5 fb3bcc497 2024-01-15 13:21:43 add workflow
4 0f88c406d 2024-01-15 13:20:23 Delete topics/ecology/tutorials/ndvi_openeo/workflows/main_workflow.ga
3 9336c8670 2024-01-15 11:24:30 add new workflow
2 c8b1d5f64 2024-01-15 11:24:05 Delete topics/ecology/tutorials/ndvi_openeo/workflows/main_workflow.ga
1 9346f227c 2024-01-12 16:25:22 add ndvi openeo tuto

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/ecology/tutorials/ndvi_openeo/workflows/main_workflow.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows