Sorting Tools

Authors: orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-JacksonGarima Singh avatar Garima SinghAdd Contributions!

Sometimes input errors are caused because of non-sorted inputs. Try using these:

  • Picard SortSam: Sort SAM/BAM by coordinate or queryname.
  • Samtools Sort: Alternate for SAM/BAM, best when used for coordinate sorting only.
  • SortBED order the intervals: Best choice for BED/Interval.
  • Sort data in ascending or descending order: Alternate choice for Tabular/BED/Interval/GTF.
  • VCFsort: Best choice for VFC.
  • Tool Form Options for Sorting: Some tools have an option to sort inputs during job execution. Whenever possible, sort inputs before using tools, especially if jobs fail for not having enough memory resources.
Persistent URL
Resource PURL: https://gxy.io/GTN:F00103
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