Do you need to merge the databases? Because you can select multiple fasta files in MaxQuant.

For MaxQuant one does not need to merge the databases, also MaxQuant offers the function to add common contaminants to the provided fasta.

Still have questions?
Gitter Chat Support
Galaxy Help Forum
Want to embed this snippet (FAQ) in your GTN Tutorial?
{% snippet  topics/proteomics/tutorials/maxquant-msstats-dda-lfq/faqs/ %}
Persistent URL
Resource purlPURL: