While most GTN tutorials include their associated workflow directly in the GTN, some may wish to write a tutorial about running workflows from WorkflowHub, e.g. leveraging the IWC workflow collection.
We’ve added two snippets which make that easier than ever:
Hands On: Importing and Launching a WorkflowHub.eu Workflow
WorkflowHub is a workflow management system which allows workflows to be FAIR (Findable, Accessible, Interoperable, and Reusable), citable, have managed metadata profiles, and be openly available for review and analytics.
Ensure that you are logged in to your Galaxy account.
Click on the Workflow menu, located in the top bar.
Click on the Import button, located in the right corner.
In the section “Import a Workflow from Configured GA4GH Tool Registry Servers (e.g. Dockstore)”, click on Search form.
In the TRS Server: workflowhub.eu menu you should type name:"gromacs-mmgbsa/main"
Click on the desired workflow, and finally select the latest available version.
After that, the imported workflows will appear in the main workflow menu. In order to run the workflow, just need to click in the workflow-runRun workflow icon.
Below is a short video showing this uncomplicated procedure:
Video: Importing from WorkflowHub
And one for Dockstore:
Hands On: Importing and Launching a Dockstore Workflow
Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
Click on galaxy-uploadImport at the top-right of the screen
Paste the following URL into the box labelled “Archived Workflow URL”: https://training.galaxyproject.org/training-material/topics/assembly/tutorials/largegenome/workflows/Galaxy-Workflow-Data_QC.ga
Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure:
@gtn:hexylena, as a key member of the phenomenally creative and passionate Galaxy Training Network team alongside @gtn:shiltemann and @gtn:bebatut, pioneered the concept of Training Infrastructure. In a world dominated by clunky virtual learning environments and expensive software, she built an open-source system that could seamlessly support individual users, trainers, and contributors across diverse disciplines and expertise levels.
With a huge thanks to ELIXIR-UK’s DaSH Fellowship funding, we are delighted to present our new Learning Pathway, “Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq”.
We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.
Helena Rasche
