GTN_ENA_upload_workflow

galaxy-interface-upload-data-to-ena/main-workflow

Author(s)

Version
1
Last updated
Aug 10, 2021
License
None Specified, defaults to CC-BY-4.0
Tags
galaxy-interface

Features
Tutorial
Submitting sequence data to ENA
Workflow Testing
Tests: ❌
Results: Not yet automated
FAIRness PURL
https://gxy.io/GTN:W00078
RO-Crate logo with flask Download Workflow RO-Crate Workflowhub cloud with gears logo View on (Dev) WorkflowHub
Launch in Tutorial Mode
Download 
flowchart TD
  0["ENA Upload tool"];
  1["ENA Upload tool"];

Inputs

Input Label

Outputs

From Output Label
toolshed.g2.bx.psu.edu/repos/iuc/ena_upload/ena_upload/0.3.2 ENA Upload tool

Tools

Tool Links
toolshed.g2.bx.psu.edu/repos/iuc/ena_upload/ena_upload/0.3.2 View in ToolShed

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL

Version History

Version Commit Time Comments
1 f6670f581 2021-08-10 08:20:15 rename

For Admins

Installing the workflow tools

wget https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/upload-data-to-ena/workflows/main_workflow.ga -O workflow.ga
workflow-to-tools -w workflow.ga -o tools.yaml
shed-tools install -g GALAXY -a API_KEY -t tools.yaml
workflow-install -g GALAXY -a API_KEY -w workflow.ga --publish-workflows