UCSC import: what should my file look like?


~2020 lines, with the following header line:

bin    name    chrom   strand  txStart txEnd   cdsStart        cdsEnd  exonCount       exonStarts      exonEnds        score   name2   cdsStartStat    cdsEndStat      exonFrames

Where:

  • txStart: Transcript start site
  • cdsStart: CodingSequence start site

Note: UCSC is updated frequently, you might get a slightly different number of lines. If you only get one row in this file, make sure you requested the entire chr22, not just one position.

Persistent URL
Resource purlPURL: https://gxy.io/GTN:F00258
Still have questions?
Gitter Chat Support
Galaxy Help Forum