Author(s)
Aurélien F. A. Moumbock,
Albert-Ludwigs-Universität Freiburg
versionVersion
3
last_modificationLast updated
Feb 15, 2022
licenseLicense MIT galaxy-tagsTags
flowchart TD
0["ℹ️ Input Dataset\nQuery ligand"];
style 0 stroke:#2c3143,stroke-width:4px;
1["ℹ️ Input Dataset\nPharmacophore library"];
style 1 stroke:#2c3143,stroke-width:4px;
2["Ligand ionization state generation"];
0 -->|output| 2;
3["Splitting ePharmaLib into individual pharmacophores"];
1 -->|output| 3;
4[" Low-energy ligand conformer search"];
2 -->|outfile| 4;
5["Pharmacophore alignment"];
4 -->|outfile| 5;
3 -->|list_output_generic| 5;
6["Concatenating the pharmacophore alignment scores"];
5 -->|score_result_file| 6;
7["Ranking the predicted protein targets according to the Tversky index 10th column"];
6 -->|out_file1| 7;
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
Click on galaxy-uploadImport at the top-right of the screen
Provide your workflow
Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: