ToolTutorials
devteam/fastqc
Filter1
Cut1
Grep1
iuc/multiqc
upload1
bgruening/tp_cut_tool
nml/collapse_dataset
Remove beginning1
bgruening/tp_cat
lparsons/cutadapt
iuc/jbrowse
devteam/bwa_mem
iuc/fastp
cat1
bgruening/tp_sort_header_tool
iuc/datamash_ops
join1
bgruening/tp_awk_tool
galaxyp/regexColumn1
bgruening/tp_find_and_replace
bgruening/tp_replace_in_line
iuc/quast
iuc/bandage_image
bgruening/tp_grep_tool
devteam/bowtie2
Grouping1
iuc/anndata_inspect
iuc/query_tabular
iuc/busco
pjbriggs/trimmomatic
bgruening/tp_easyjoin_tool
devteam/Add_a_column1
bgruening/tp_replace_in_column
bgruening/tp_sorted_uniq
interactive_tool_rstudio
bgruening/tp_sed_tool
sort1
iuc/samtools_view
iuc/ggplot2_point
iuc/anndata_manipulate
iuc/nanoplot
devteam/samtools_stats
devteam/tab2fasta
iuc/datamash_transpose
__EXTRACT_DATASET__
crs4/taxonomy_krona_chart
bgruening/tp_tail_tool
devteam/picard_MarkDuplicates
galaxyp/maxquant
galaxyp/msconvert
iuc/hisat2
imgteam/unzip
galaxyp/regex1
iuc/kraken2
iuc/macs2_callpeak
bgruening/deeptools_compute_matrix
devteam/samtools_idxstats
devteam/bamFilter
ebi-gxa/anndata_ops
iuc/scanpy_plot
iuc/minimap2
iuc/fasta-stats
iuc/bandage_info
bgruening/flye
iuc/seqtk_subseq
random_lines1
iuc/snpEff
galaxyp/fasta_merge_files_and_filter_unique_sequences
devteam/fasta2tab
galaxyp/search_gui
galaxyp/peptide_shaker
bgruening/model_prediction
bgruening/keras_train_and_eval
bgruening/keras_model_config
bgruening/keras_model_builder
iuc/collection_column_join
Paste1
Summary_Statistics1
Count1
bgruening/openbabel_compound_convert
bgruening/get_pdb
iuc/bedtools_intersectbed
bgruening/trim_galore
bgruening/deeptools_plot_heatmap
bgruening/deeptools_bam_coverage
iuc/rna_star
iuc/deseq2
__MERGE_COLLECTION__
lecorguille/abims_xcms_xcmsSet
lecorguille/xcms_merge
lecorguille/abims_xcms_group
lecorguille/abims_xcms_fillPeaks
lecorguille/msnbase_readmsdata
bgruening/bg_diamond
iuc/meryl
iuc/porechop
interactive_tool_panoply
iuc/gemini_load
iuc/circos
iuc/fasterq_dump
iuc/snpSift_extractFields
iuc/filter_tabular
devteam/ncbi_blastp_wrapper
bgruening/ml_visualization_ex
iuc/stringtie
devteam/gffread
ecology/xarray_metadata_info
bgruening/deeptools_plot_fingerprint
bgruening/deeptools_plot_correlation
bgruening/deeptools_multi_bam_summary
iuc/table_compute
iuc/pygenomeTracks
iuc/featurecounts
iuc/collection_element_identifiers
__FLATTEN__
csv_to_tabular
bgruening/sklearn_ensemble
bgruening/plotly_regression_performance_plots
devteam/freebayes
devteam/bamleftalign
lecorguille/abims_xcms_retcor
iuc/newick_display
iuc/metaphlan
ebi-gxa/scanpy_plot_embed
ebi-gxa/scanpy_find_cluster
ebi-gxa/scanpy_compute_graph
ebi-gxa/scanpy_filter_cells
ebi-gxa/scanpy_read_10x
ebi-gxa/retrieve_scxa
bgruening/music_construct_eset
iuc/scanpy_inspect
iuc/scanpy_cluster_reduce_dimension
iuc/anndata_import
interactive_tool_jupyter_notebook
iuc/merqury
iuc/genomescope
iuc/bedtools_bamtobed
iuc/bwa_mem2
iuc/unicycler
iuc/megahit
interactive_tool_odv
devteam/fastq_to_tabular
CONVERTER_gz_to_uncompressed
rnateam/rbc_mafft
iuc/compose_text_param
__ZIP_COLLECTION__
iuc/bcftools_norm
iuc/snpEff_download
devteam/samtools_rmdup
iuc/snpeff_sars_cov_2
iuc/lofreq_call
bgruening/tp_split_on_column
Show beginning1
galaxyp/cardinal_quality_report
galaxyp/unipept
bgruening/bg_uniq
bgruening/sklearn_searchcv
bgruening/sklearn_build_pipeline
wig_to_bigWig
iuc/umi_tools_extract
iuc/gffcompare
param_value_from_file
iuc/volcanoplot
iuc/annotatemyids
devteam/clustalw
peterjc/seq_filter_by_id
ecology/xarray_coords_info
devteam/bwa
Convert characters1
devteam/mergeCols1
iuc/snippy
iuc/bcftools_consensus
bgruening/split_file_to_collection
chemteam/md_converter
bgruening/ctb_silicos_qed
bgruening/openbabel_svg_depiction
bgruening/chembl
bgruening/tp_head_tool
iuc/bedtools_sortbed
bgruening/deeptools_bam_compare
nilesh/rseqc_read_distribution
nilesh/rseqc_infer_experiment
nilesh/rseqc_geneBody_coverage
iuc/ggplot2_heatmap2
bgruening/sklearn_svm_classifier
devteam/fastq_paired_end_interlacer
iuc/mothur_unique_seqs
iuc/mothur_summary_seqs
iuc/mothur_screen_seqs
iuc/mothur_pre_cluster
iuc/mothur_make_shared
iuc/mothur_filter_seqs
iuc/mothur_count_seqs
iuc/mothur_cluster_split
iuc/mothur_classify_seqs
iuc/mothur_classify_otu
crs4/prokka
galaxyp/msstats
devteam/histogram_rpy
devteam/gops_intersect_1
galaxyp/uniprotxml_downloader
melpetera/intens_check
galaxyp/cardinal_mz_images
melpetera/generic_filter
melpetera/Batch_correction
lecorguille/xcms_plot_chromatogram
lecorguille/abims_CAMERA_annotateDiffreport
ethevenot/quality_metrics
iuc/kraken_biom
interactive_tool_phinch
iuc/mothur_venn
iuc/mothur_tree_shared
iuc/mothur_summary_single
iuc/mothur_sub_sample
iuc/mothur_remove_seqs
iuc/mothur_remove_lineage
iuc/mothur_remove_groups
iuc/mothur_rarefaction_single
iuc/mothur_heatmap_sim
iuc/mothur_dist_shared
iuc/mothur_dist_seqs
iuc/mothur_count_groups
iuc/mothur_cluster
iuc/mothur_chimera_vsearch
devteam/XY_Plot_1
iuc/krakentools_kreport2krona
rnateam/bg_sortmerna
iuc/humann_unpack_pathways
iuc/humann_split_stratified_table
iuc/humann_renorm_table
iuc/humann_rename_table
iuc/humann_regroup_table
iuc/humann
iuc/graphlan_annotate
iuc/graphlan
iuc/export2graphlan
bebatut/combine_metaphlan2_humann2
__UNZIP_COLLECTION__
bgruening/cp_save_images
bgruening/cp_measure_object_size_shape
bgruening/cp_measure_object_intensity
bgruening/cp_identify_primary_objects
bgruening/cp_export_to_spreadsheet
bgruening/cp_common
bgruening/cp_cellprofiler
imgteam/ip_convertimage
imgteam/ip_filter_standard
imgteam/ip_threshold
ebi-gxa/sceasy_convert
ebi-gxa/dropletutils_read_10x
iuc/sceasy_convert
ebi-gxa/seurat_read10x
ebi-gxa/monocle3_create
ebi-gxa/scanpy_run_umap
ebi-gxa/scanpy_run_tsne
bgruening/music_manipulate_eset
bgruening/add_line_to_file
iuc/dropletutils
iuc/scanpy_remove_confounders
iuc/scanpy_normalize
iuc/scanpy_filter
iuc/pe_histogram
bgruening/deeptools_compute_gc_bias
gga/iframe
gga/create_or_update
nml/staramr_search
iuc/tbl2gff3
iuc/bakta
galaxyp/eggnog_mapper
bgruening/interproscan
iuc/maker_map_ids
iuc/maker
iuc/jcvi_gff_stats
iuc/chromeister
iuc/medaka_consensus_pipeline
bgruening/racon
iuc/samtools_fastx
iuc/pretext_snapshot
iuc/pretext_map
iuc/gfa_to_fa
iuc/bellerophon
bgruening/gfastats
devteam/fasta_filter_by_length
devteam/addValue
nml/metaspades
iuc/ngsutils_bam_filter
iuc/megahit_contig2fastg
iuc/coverm_contig
devteam/bamtools
iuc/snpSift_filter
ecology/xarray_select
climate/climate_stripes
devteam/bam_to_sam
iuc/qualimap_bamqc
iuc/ivar_consensus
devteam/fasta_compute_length
iuc/gemini_inheritance
mbernt/fasta_regex_finder
iuc/pangolin
iuc/gemini_query
devteam/samtools_calmd
__RELABEL_FROM_FILE__
__BUILD_LIST__
iuc/lofreq_viterbi
iuc/lofreq_indelqual
galaxyp/cardinal_data_exporter
proteore/Jvenn
proteore/retrieve_from_hpa
proteore/IDconverter
proteore/MQoutputfilter
proteore/rna_abbased_data
jay/pdaug_sequence_property_based_descriptors
jay/pdaug_merge_dataframes
jay/pdaug_basic_plots
jay/pdaug_addclasslabel
iuc/sqlite_to_tabular
galaxyp/msstatstmt
galaxyp/XTandemAdapter
galaxyp/TextExporter
galaxyp/PeptideIndexer
galaxyp/IDScoreSwitcher
galaxyp/IDPosteriorErrorProbability
galaxyp/FileInfo
galaxyp/FidoAdapter
galaxyp/FalseDiscoveryRate
galaxyp/dbbuilder
bgruening/uniprot
galaxyp/metaquantome_viz
galaxyp/metaquantome_stat
galaxyp/metaquantome_sample
galaxyp/metaquantome_filter
galaxyp/metaquantome_expand
galaxyp/metaquantome_db
bgruening/sklearn_to_categorical
bgruening/sklearn_generalized_linear
iuc/meme_chip
iuc/Extract genomic DNA 1
__SORTLIST__
iuc/stringtie_merge
gene2exon1
__FILTER_FROM_FILE__
galaxyp/filter_by_fasta_ids
bgruening/salmon
iuc/funannotate_predict
bgruening/repeatmasker_wrapper
tabular_to_csv
ecology/spocc_occ
wc_gnu
devteam/ncbi_blastn_wrapper
devteam/fastq_groomer
ecology/xarray_mapplot
bgruening/graphicsmagick_image_montage
addValue
interactive_tool_copernicus_notebook
interactive_tool_copernicus
iuc/est_abundance
iuc/stacks_procrad
iuc/stacks_populations
iuc/stacks_denovomap
iuc/tb_profiler_profile
iuc/tb_variant_filter
bgruening/ctb_np-likeness-calculator
bgruening/ctb_chemfp_mol2fps
chemteam/gmx_solvate
chemteam/gmx_sim
chemteam/gmx_setup
chemteam/gmx_em
chemteam/gmx_editconf
bgruening/ctb_im_rxn_maker
chemteam/mdanalysis_cosine_analysis
chemteam/bio3d_rmsf
chemteam/bio3d_rmsd
chemteam/bio3d_pca
comp1
iuc/gtftobed12
iuc/goseq
bgruening/plotly_ml_performance_plots
iuc/mothur_merge_files
iuc/mothur_make_biom
iuc/mothur_align_seqs
devteam/picard_MergeSamFiles
marie-tremblay-metatoul/normalization
ethevenot/Multivariate
iuc/checkm_lineage_wf
devteam/ncbi_blastx_wrapper
bgruening/graphicsmagick_image_convert
iuc/vapor
iuc/iqtree
iuc/bamtools_split_ref
galaxyp/metanovo
galaxyp/fasta_cli
galaxyp/pepquery2
iuc/chopin2
interactive_tool_qgis
melpetera/idchoice
lecorguille/abims_xcms_summary
lecorguille/xcms_export_samplemetadata
iuc/fastq_dump
iuc/jq
devteam/fastq_to_fasta_python
devteam/data_manager_fetch_genome_all_fasta_dbkey
devteam/bwa_mem_index_builder_data_manager
muon-spectroscopy-computational-project/pm_uep_opt
muon-spectroscopy-computational-project/pm_muairss_read
recetox/waveica
recetox/riassigner
recetox/ramclustr_define_experiment
recetox/ramclustr
recetox/matchms_similarity
recetox/matchms_formatter
recetox/matchms_filtering
galaxyp/cardinal_spectra_plots
galaxyp/cardinal_filtering
galaxyp/maldi_quant_preprocessing
galaxyp/maldi_quant_peak_detection
galaxyp/cardinal_segmentations
galaxyp/cardinal_preprocessing
galaxyp/cardinal_combine
galaxyp/cardinal_classification
bgruening/join_files_on_column_fuzzy
fgiacomoni/wsdl_hmdb
ethevenot/Univariate
iuc/mlst
iuc/krakentools_extract_kraken_reads
iuc/ggplot2_heatmap
iuc/fasttree
iuc/clair3
iuc/bedtools_getfastabed
iuc/abricate
bgruening/tp_multijoin_tool
__FILTER_FAILED_DATASETS__
__FILTER_EMPTY_DATASETS__
iuc/PlasFlow
iuc/miniasm
iuc/mothur_taxonomy_to_krona
iuc/mothur_seq_error
iuc/mothur_make_contigs
iuc/mothur_get_groups
iuc/datamash_reverse
interactive_tool_pavian
tduigou/rrparser
tduigou/rpextractsink
tduigou/rpcompletion
tduigou/rp2paths
tduigou/retropath2
tduigou/get_sbml_model
tduigou/selenzy-wrapper
tduigou/rpbasicdesign
tduigou/dnabot
tduigou/rpthermo
tduigou/rpscore
tduigou/rpranker
iuc/rpfba
iuc/seqtk_trimfq
iuc/seqtk_mergepe
iuc/qiime_align_seqs
iuc/mothur_degap_seqs
ecology/aligned_to_consensus
ecology/ab1_fastq_converter
devteam/cshl_fastx_reverse_complement
devteam/cshl_fastq_to_fasta
devteam/fastq_masker_by_quality
iuc/pycoqc
iuc/fastqe
bgruening/cp_track_objects
bgruening/cp_tile
bgruening/cp_overlay_outlines
bgruening/cp_color_to_gray
perssond/quantification
perssond/unet_coreograph
perssond/basic_illumination
perssond/ashlar
goeckslab/vitessce_spatial
goeckslab/scimap_phenotyping
goeckslab/scimap_mcmicro_to_anndata
goeckslab/rename_tiff_channels
goeckslab/mesmer
imgteam/ip_2d_split_binaryimage_by_watershed
imgteam/ip_2d_filter_segmentation_by_features
imgteam/ip_2d_feature_extraction
iuc/idr_download_by_ids
bgruening/cp_relate_objects
bgruening/cp_measure_texture
bgruening/cp_measure_image_quality
bgruening/cp_measure_image_intensity
bgruening/cp_measure_image_area_occupied
bgruening/cp_measure_granularity
bgruening/cp_mask_image
bgruening/cp_image_math
bgruening/cp_gray_to_color
bgruening/cp_enhance_or_suppress_features
bgruening/cp_display_data_on_image
bgruening/cp_convert_objects_to_image
imgteam/ip_overlay_images
imgteam/ip_imageinfo
imgteam/ip_count_objects
imgteam/ip_binary_to_labelimage
imgteam/ip_histogram_equalization
bgruening/music_compare
devteam/tabular_to_fastq
iuc/umi_tools_count
ebi-gxa/scanpy_run_paga
ebi-gxa/scanpy_run_fdg
ebi-gxa/scanpy_run_dpt
ebi-gxa/scanpy_run_diffmap
ebi-gxa/scanpy_plot_trajectory
ebi-gxa/scanpy_regress_variable
ebi-gxa/_salmon_kallisto_mtx_to_10x
ebi-gxa/_ensembl_gtf2gene_list
ebi-gxa/dropletutils_empty_drops
ebi-gxa/_dropletBarcodePlot
bgruening/alevin
ebi-gxa/hca_matrix_downloader
ebi-gxa/monocle3_topmarkers
ebi-gxa/monocle3_reduceDim
ebi-gxa/monocle3_preprocess
ebi-gxa/monocle3_plotCells
ebi-gxa/monocle3_partition
ebi-gxa/monocle3_orderCells
ebi-gxa/monocle3_learnGraph
ebi-gxa/monocle3_diffExp
ebi-gxa/scanpy_parameter_iterator
iuc/raceid_trajectory
iuc/raceid_inspecttrajectory
iuc/raceid_inspectclusters
iuc/raceid_filtnormconf
iuc/raceid_clustering
raceid_trajectory
raceid_inspecttrajectory
raceid_inspectclusters
raceid_filtnormconf
raceid_clustering
iuc/scater_plot_pca
iuc/scater_plot_dist_scatter
iuc/scater_filter
iuc/scater_create_qcmetric_ready_sce
iuc/column_remove_by_header
iuc/sinto_fragments
iuc/sinto_barcode
iuc/episcanpy_preprocess
iuc/episcanpy_build_matrix
ebi-gxa/scanpy_scale_data
ebi-gxa/scanpy_run_pca
ebi-gxa/scanpy_normalise_data
ebi-gxa/scanpy_find_variable_genes
ebi-gxa/scanpy_find_markers
ebi-gxa/scanpy_filter_genes
interactive_tool_cellxgene
iuc/rna_starsolo
bgruening/music_inspect_eset
bgruening/music_deconvolution
iuc/idr
toolshed.g2.bx.psu.edu/bgruening
rnateam/metilene
iuc/bwameth
bgruening/replace_column_with_key_value_file
bgruening/pileometh
bgruening/deeptools_plot_profile
kpbioteam/minfi_analysis
kpbioteam/clusterprofiler_go
kpbioteam/clusterprofiler_bitr
kpbioteam/chipeakanno_annopeaks
crs4/bwa_mem
bgruening/hicexplorer_hicplottads
bgruening/hicexplorer_hicplotmatrix
bgruening/hicexplorer_hicpca
bgruening/hicexplorer_hicmergematrixbins
bgruening/hicexplorer_hicfindtads
bgruening/hicexplorer_hiccorrectmatrix
bgruening/hicexplorer_hicbuildmatrix
bgruening/deeptools_correct_gc_bias
iuc/mageck_test
iuc/mageck_mle
iuc/mageck_count
iuc/ncbi_acc_download
iuc/bp_genbank2gff3
cpt/edu.tamu.cpt.gff3.customGbkToGff
bgruening/ctb_simsearch
bgruening/openbabel_remDuplicates
bgruening/antismash
iuc/gecko
iuc/plasmidfinder
iuc/isescan
iuc/integron_finder
gga/list_organism
gga/create_account
iuc/feelnc
Extract_features1
iuc/snap_training
bgruening/augustus_training
iuc/funannotate_compare
iuc/funannotate_annotate
iuc/aegean_parseval
simon-gladman/fasta-stats
iuc/rapidnj
iuc/orfipy
bgruening/bg_diamond_view
bgruening/bg_diamond_makedb
iuc/red
iuc/bedtools_maskfastabed
csbl/repeatmodeler
simon-gladman/velvetoptimiser
nml/spades
barchart_gnuplot
galaxy-australia/smudgeplot
bgruening/blobtoolkit
interactive_tool_blobtoolkit
iuc/seqtk_sample
iuc/yahs
iuc/salsa
iuc/purge_dups
bgruening/hifiasm
bgruening/bionano_scaffold
iuc/circos_interval_to_tiles
iuc/circos_aln_to_links
iuc/bedtools_complementbed
devteam/lastz_wrapper_2
iuc/polypolish
iuc/filtlong
CONVERTER_bz2_to_uncompressed
iuc/shovill
iuc/pilon
bgruening/tp_tac
iuc/ena_upload
ieguinoa/ena_webin_cli
iuc/galaxy_intermine_exchange
intermine
interactive_tool_pangeo_notebook
ecology/xarray_netcdf2netcdf
ecology/timeseries_extraction
ecology/argo_getdata
interactive_tool_divand
climate/ctsm_fates
climate/psy_maps
climate/cds_essential_variability
climate/c3s
iuc/circos_wiggle_to_scatter
iuc/circos_interval_to_tile
iuc/circos_interval_to_text
iuc/circos_gc_skew
gff2bed1
iuc/gemini_db_info
devteam/vcfallelicprimitives
iuc/gene_iobio_display_generation_iframe
iuc/pyega3
iuc/bcftools_merge
CONVERTER_uncompressed_to_gz
wolma/mimodd_info
iuc/fatovcf
iuc/samtools_merge
iuc/ivar_trim
devteam/EMBOSS: maskseq51
__APPLY_RULES__
iuc/nextclade
iuc/tbvcfreport
iuc/jvarkit_wgscoverageplotter
devteam/EMBOSS:%20seqret84
iuc/varscan_somatic
iuc/gemini_annotate
bgruening/bg_column_arrange_by_header
wolma/mimodd_vcf_filter
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iuc/control_freec
bgruening/tp_text_file_with_recurring_lines
{{version_wc}}
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{{version_split}}
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{{version_select_first}}
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galaxyp/pyprophet_score
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jay/pdaug_tsvtofasta
jay/pdaug_peptide_sequence_analysis
jay/pdaug_peptide_data_access
jay/pdaug_fishers_plot
galaxyp/mz_to_sqlite
galaxyp/encyclopedia_searchtolib
galaxyp/encyclopedia_quantify
galaxyp/TargetedFileConverter
galaxyp/OpenSwathDecoyGenerator
galaxyp/OpenSwathAssayGenerator
galaxyp/diapysef
proteore/reactome_analysis
proteore/cluter_profiler
proteore/prot_features
proteore/retr_pepatlas1
galaxyp/PeakPickerHiRes
galaxyp/MSGFPlusAdapter
galaxyp/IDMerger
galaxyp/IDFilter
galaxyp/ConsensusID
jay/pdaug_ml_models
galaxyp/translate_bed
galaxyp/gffcompare_to_bed
galaxyp/custom_pro_db
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galaxyp/ProteinQuantifier
galaxyp/MultiplexResolver
galaxyp/IDMapper
galaxyp/IDConflictResolver
galaxyp/FeatureFinderMultiplex
galaxyp/peptide_genomic_coordinate
galaxyp/pep_pointer
PeptideIndexer
MzTabExporter
MSGFPlusAdapter
IDMerger
IDMapper
IDFilter
IDConflictResolver
HighResPrecursorMassCorrector
FileMerger
FileFilter
FeatureFinderMultiplex
FalseDiscoveryRate
ConsensusID
galaxyp/DecoyDatabase
galaxyp/flashlfq
peterjc/wolf_psort
term_id_vs_term_name
get_subontology_from
PeakPickerHiRes
FileConverter
bgruening/plotly_parallel_coordinates_plot
iuc/iwtomics_testandplot
iuc/iwtomics_plotwithscale
iuc/iwtomics_loadandplot
interactive_tool_ml_jupyter_notebook
iuc/pubmed_by_queries
iuc/pmids_to_pubtator_matrix
interactive_tool_simtext_app
bgruening/sklearn_nn_classifier
bgruening/sklearn_estimator_attributes
vijay/pancancer_within_disease_analysis
vijay/pancancer_visualize_decisions
vijay/pancancer_targene_summary_figures
vijay/pancancer_targene_pharmacology
vijay/pancancer_targene_cell_line_predictions
vijay/pancancer_pathway_count_heatmaps
vijay/pancancer_map_mutation_class
vijay/pancancer_external_sample_status_prediction
vijay/pancancer_compare_within_models
vijay/pancancer_classifier
vijay/pancancer_apply_weights
vijay/pancancer_alternative_genes_pathwaymapper
iuc/trinotate
iuc/trinity_samples_qccheck
iuc/trinity_run_de_analysis
iuc/trinity_filter_low_expr_transcripts
iuc/trinity_define_clusters_by_cutting_tree
iuc/trinity_contig_exn50_statistic
iuc/trinity_analyze_diff_expr
iuc/trinity_align_and_estimate_abundance
iuc/trinity_abundance_estimates_to_matrix
iuc/trinity
iuc/transdecoder
iuc/describe_samples
iuc/chira_quantify
iuc/chira_merge
iuc/chira_map
iuc/chira_extract
iuc/chira_collapse
iuc/fgsea
iuc/egsea
iuc/goslimmer
iuc/goenrichment
rnateam/rcas
rnateam/peakachu
iuc/umi_tools_dedup
iuc/bedtools_slopbed
iuc/bedtools_genomecoveragebed_bedgraph
iuc/bctools_extract_alignment_ends
nilesh/rseqc_junction_saturation
nilesh/rseqc_junction_annotation
nilesh/rseqc_inner_distance
iuc/rna_quast
iuc/isoformswitchanalyzer
bgruening/pfamscan
bgruening/cpat
CONVERTER_fasta_to_tabular
iuc/bedtools_bamtofastq
devteam/samtool_filter2
devteam/fastq_manipulation
rnateam/targetfinder
rnateam/rbc_mirdeep2_quantifier
rnateam/rbc_mirdeep2_mapper
peterjc/sample_seqs
iuc/limma_voom
iuc/heinz_visualization
iuc/heinz_scoring
iuc/heinz_bum
iuc/heinz
rnateam/blockclust
rnateam/blockbuster
devteam/samtools_sort
padge/phykit_alignment_based
padge/clipkit
iuc/proteinortho_grab_proteins
iuc/proteinortho
bgruening/glimmer_gbk_to_orf
iuc/stacks_genotypes
ecology/srs_spectral_indices
ecology/srs_process_data
ecology/srs_preprocess_s2
ecology/srs_pca
ecology/srs_global_indices
ecology/srs_diversity_maps
interactive_tool_wallace
mnhn65mo/tab2csv_R
mnhn65mo/flight-curve
mnhn65mo/csv2tab_R
ecology/regionalgam_plot_trend
ecology/regionalgam_gls
ecology/regionalgam_glmmpql
ecology/regionalgam_flight_curve
ecology/regionalgam_autocor_acf
ecology/regionalgam_ab_index
mergeCols1
ecology/gdal_ogr2ogr
iuc/obi_uniq
iuc/obi_tab
iuc/obi_stat
iuc/obi_ngsfilter
iuc/obi_illumina_pairend
iuc/obi_grep
iuc/obi_clean
iuc/obi_annotate
climate/cdo_operations
kellrott/regex_replace
iuc/stacks_refmap
devteam/bwa_wrapper
interactive_tool_holoviz
interactive_tool_metashark
ecology/cb_ivr
ecology/cb_div
ecology/cb_dissim
cb_qecb
cb_ivr
cb_eco
ecology/pampa_presabs
ecology/pampa_plotglm
ecology/pampa_glmsp
ecology/pampa_glmcomm
ecology/pampa_communitymetrics
ecology/obisindicators
ecology/obis_data
ecology/tool_anonymization
ecology/ecology_stat_presence_abs
ecology/ecology_presence_abs_abund
ecology/ecology_link_between_var
ecology/ecology_homogeneity_normality
ecology/ecology_beta_diversity
interactive_tool_metashrimps
iuc/recentrifuge
iuc/raxml
mvdbeek/addName
iuc/snp_sites
iuc/snp_dists
xchem_pose_scoring
bgruening/xchem_transfs_scoring
bgruening/sucos_max_score
bgruening/rxdock_rbdock
bgruening/rxdock_rbcavity
bgruening/rdock_rbdock
bgruening/rdock_rbcavity
bgruening/enumerate_charges
bgruening/ctb_frankenstein_ligand
setup
namd_nvt
namd_npt
minimizer
bgruening/rdconf
bgruening/openbabel_addh
bgruening/ctb_alignit
chemteam/vmd_hbonds
chemteam/gmx_merge_topology_files
chemteam/gmx_energy
chemteam/bio3d_pca_visualize
chemteam/ambertools_acpype
bgruening/sdf_to_tab
bgruening/ctb_remIons
bgruening/ctb_remDuplicates
bgruening/ctb_obgrep
bgruening/ctb_filter
bgruening/ctb_compound_convert
bgruening/ctb_change_title
bgruening/fpocket
bgruening/ctb_online_data_fetch
bgruening/ctb_chemfp_nxn_clustering
bgruening/ctb_chemfp_butina_clustering
bgruening/prepare_receptor
bgruening/prepare_box
bgruening/docking
chemteam/mdanalysis_rdf
chemteam/mdanalysis_ramachandran_plot
chemteam/mdanalysis_distance
chemteam/mdanalysis_dihedral
iuc/bedtools_mergebed
iuc/transit_gumbel
iuc/gff_to_prot
devteam/bowtie_wrapper
bgruening/bg_find_subsequences
nick/sequence_content_trimmer
nick/make_families
nick/dunovo
nick/correct_barcodes
nick/align_families
nick/allele_counts_1
blankenberg/naive_variant_caller
iuc/pathview
iuc/length_and_gc_content
iuc/dexseq_count
iuc/dexseq
iuc/deg_annotate
__TAG_FROM_FILE__
ChangeCase
bgruening/sklearn_numeric_clustering
devteam/velveth
devteam/velvetg
saskia-hiltemann/krona-text
iuc/mothur_make_group
iuc/metaphlan2krona
iuc/metaphlan2
iuc/humann2_renorm_table
iuc/humann2_regroup_table
iuc/humann2
devteam/cshl_fastq_quality_filter
devteam/get_flanks1
CONVERTER_interval_to_bed_0
devteam/vcffilter2
devteam/vcf2tsv