Scanpy Read10x: into hdf5 object handled by scanpy

Metadata

Links

• bio.tools: SCANPY

EDAM Operations

• Differential gene expression profiling

EDAM Topics

• Genetics
• Cell biology
• Gene expression

Observed Tool Versions

Within GTN tutorials

1.9.3+galaxy0

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

1.8.1+galaxy9

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️

1.8.1+galaxy0

• UseGalaxy.eu ⭐️

Relevant Tutorials

• Single Cell / Importing files from public atlases
• Single Cell / Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• Single Cell / Combining single cell datasets after pre-processing