Filter SAM or BAM, output SAM or BAM: files on FLAG MAPQ RG LN or by region

Metadata

Links

• bio.tools: SAMtools

EDAM Operations

• Filtering
• Indexing
• Formatting
• Editing
• Visualisation
• Parsing
• Sorting

EDAM Topics

• Sequencing
• Rare diseases
• Mapping
• Sequence analysis

Observed Tool Versions

Within GTN tutorials

1.1.2

• UseGalaxy.eu ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.be

Relevant Tutorials

• Transcriptomics / Differential abundance testing of small RNAs