Download and Extract Reads in FASTQ: format from NCBI SRA

Metadata

Links

• bio.tools: SRA Software Toolkit

EDAM Operations

• Data retrieval
• Formatting

EDAM Topics

• Genomics
• Bioinformatics

Observed Tool Versions

Within GTN tutorials

3.1.1+galaxy1

• UseGalaxy.eu ⭐️
• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️

2.11.0+galaxy0

• UseGalaxy.fr ⭐️
• UseGalaxy.org (Main) ⭐️
• UseGalaxy.org.au ⭐️
• UseGalaxy.be
• UseGalaxy.no

Relevant Tutorials

• Using Galaxy and Managing your Data / SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• Variant Analysis / Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates