microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Mina Hojat Ansari
Igor Makunin
Anton Nekrutenko
Timothy J. Griffin
Willem de Koning
Siyu Chen
Armin Dadras
Dave Clements
Matúš Kalaš
Galo A. Goig
Fotis E. Psomopoulos
Valentin Loux
Maria Doyle
Paul Zierep
Bert Droesbeke
Jennifer Hillman-Jackson
Nathan Dunn
Thoba Lose
Pratik Jagtap
Enis Afgan
Mélanie Petera
Bazante Sanders
Cristóbal Gallardo
Subina Mehta
Nuwan Goonasekera
Engy Nasr
Daniela Brites
Stéphanie Robin
Christoph Stritt
Matthias Bernt
Natalie Whitaker-Allen
Simon Bray
Ray Sajulga
Nate Coraor
William Durand
Deepti Varshney
Sophia Hampe
Anthony Bretaudeau
Santino Faack
James Johnson
Tristan Reynolds
Teresa Müller
Björn Grüning
Clea Siguret
Mateo Boudet
Niall Beard
Emma Leith
Simon Gladman
Wolfgang Maier
Linelle Abueg
Giuseppe Defazio
Alex Ostrovsky
Helena Rasche
Torsten Seemann
Peter van Heusden
Clemens Blank
Tarnima Omara
Vini Salazar
Gildas Le Corguillé
Nikos Pechlivanis
Anna Syme
Delphine Lariviere
Bérénice Batut
Hélène Chiapello
Praveen Kumar
Christine Oger
Miaomiao Zhou
Polina Polunina
Lucille Delisle
Saskia Hiltemann
Verena Moosmann
Michael Thang
Hans-Rudolf Hotz
Nicola Soranzo
Marie Crane
Funding
These individuals or organisations provided funding support for the development of this resource
Melbourne Bioinformatics
IFB
Avans
ABRomics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ELIXIR Europe
The University of Melbourne