microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data | |||||
| Making sense of a newly assembled genome | |||||
| Unicycler Assembly |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
James Johnson
Nuwan Goonasekera
Bazante Sanders
Peter van Heusden
Clemens Blank
Marie Crane
Christoph Stritt
Anton Nekrutenko
Siyu Chen
Tarnima Omara
Niall Beard
Bert Droesbeke
Timothy J. Griffin
Praveen Kumar
Dave Clements
Natalie Whitaker-Allen
Engy Nasr
Daniela Brites
Saskia Hiltemann
Miaomiao Zhou
Nicola Soranzo
Subina Mehta
Igor Makunin
Michael Thang
Linelle Abueg
Pratik Jagtap
Torsten Seemann
Mateo Boudet
Jennifer Hillman-Jackson
Gildas Le Corguillé
Willem de Koning
Simon Gladman
Tristan Reynolds
Fotis E. Psomopoulos
Deepti Varshney
Nikos Pechlivanis
Delphine Lariviere
Verena Moosmann
Sophia Hampe
Lucille Delisle
Polina Polunina
Xenia Morera Martínez
Enis Afgan
Alex Ostrovsky
Paul Zierep
Anthony Bretaudeau
Nathan Dunn
Mélanie Pétéra
Matthias Bernt
Clea Siguret
Ray Sajulga
Matúš Kalaš
Armin Dadras
Anna Syme
Hélène Chiapello
Wolfgang Maier
William Durand
Santino Faack
Vini Salazar
Björn Grüning
Maria Doyle
Teresa Müller
Bérénice Batut
Thoba Lose
Emma Leith
Christine Oger
Stéphanie Robin
Nate Coraor
Cristóbal Gallardo
Galo A. Goig
Simon Bray
Valentin Loux
Hans-Rudolf Hotz
Giuseppe Defazio
Mina Hojat Ansari
Helena Rasche
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ELIXIR Europe
Melbourne Bioinformatics
Australian BioCommons
The University of Melbourne
IFB