microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Subina Mehta
Valentin Loux
Paul Zierep
Helena Rasche
Fotis E. Psomopoulos
Thoba Lose
Jennifer Hillman-Jackson
Bert Droesbeke
Stéphanie Robin
Niall Beard
Michael Thang
Nathan Dunn
Matúš Kalaš
Nicola Soranzo
Pratik Jagtap
Maria Doyle
Nuwan Goonasekera
Natalie Whitaker-Allen
Engy Nasr
Hans-Rudolf Hotz
Nate Coraor
Clemens Blank
Galo A. Goig
Simon Bray
Gildas Le Corguillé
Praveen Kumar
Enis Afgan
Torsten Seemann
Polina Polunina
Vini Salazar
Anthony Bretaudeau
Wolfgang Maier
Matthias Bernt
Peter van Heusden
Giuseppe Defazio
Simon Gladman
Igor Makunin
Siyu Chen
Ray Sajulga
Christine Oger
Clea Siguret
Alex Ostrovsky
Mina Hojat Ansari
Verena Moosmann
Anna Syme
William Durand
Björn Grüning
Willem de Koning
Delphine Lariviere
Cristóbal Gallardo
Bazante Sanders
Sophia Hampe
Dave Clements
Tarnima Omara
Mélanie Petera
Lucille Delisle
Linelle Abueg
Teresa Müller
Mateo Boudet
Saskia Hiltemann
Christoph Stritt
Anton Nekrutenko
Tristan Reynolds
Miaomiao Zhou
Bérénice Batut
Emma Leith
Armin Dadras
Daniela Brites
Nikos Pechlivanis
Hélène Chiapello
Deepti Varshney
Marie Crane
Santino Faack
James Johnson
Timothy J. Griffin
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
Avans
The University of Melbourne
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ELIXIR Europe
Australian BioCommons