microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Hans-Rudolf Hotz
Willem de Koning
Enis Afgan
Cristóbal Gallardo
Saskia Hiltemann
Emma Leith
Bérénice Batut
Natalie Whitaker-Allen
Miaomiao Zhou
Giuseppe Defazio
Helena Rasche
Simon Gladman
Anthony Bretaudeau
Igor Makunin
Nate Coraor
Lucille Delisle
William Durand
Nathan Dunn
Simon Bray
Hélène Chiapello
Stéphanie Robin
Ray Sajulga
Nicola Soranzo
Siyu Chen
Verena Moosmann
Vini Salazar
Thoba Lose
Jennifer Hillman-Jackson
Torsten Seemann
Deepti Varshney
Mélanie Petera
Bazante Sanders
Paul Zierep
Polina Polunina
Bert Droesbeke
Gildas Le Corguillé
Fotis E. Psomopoulos
Clemens Blank
Mina Hojat Ansari
James Johnson
Delphine Lariviere
Timothy J. Griffin
Maria Doyle
Michael Thang
Christine Oger
Matúš Kalaš
Marie Crane
Sophia Hampe
Björn Grüning
Clea Siguret
Anna Syme
Valentin Loux
Pratik Jagtap
Praveen Kumar
Linelle Abueg
Anton Nekrutenko
Daniela Brites
Alex Ostrovsky
Tarnima Omara
Tristan Reynolds
Nuwan Goonasekera
Christoph Stritt
Mateo Boudet
Teresa Müller
Dave Clements
Matthias Bernt
Subina Mehta
Nikos Pechlivanis
Engy Nasr
Niall Beard
Santino Faack
Peter van Heusden
Armin Dadras
Galo A. Goig
Wolfgang Maier
Funding
These individuals or organisations provided funding support for the development of this resource
ELIXIR Europe
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Avans
The University of Melbourne
ABRomics