microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
James Johnson
Niall Beard
Christine Oger
Paul Zierep
Nicola Soranzo
Delphine Lariviere
Deepti Varshney
Galo A. Goig
Hans-Rudolf Hotz
Christoph Stritt
Emma Leith
Valentin Loux
Alex Ostrovsky
Björn Grüning
Stéphanie Robin
Giuseppe Defazio
Tristan Reynolds
Polina Polunina
Mateo Boudet
Dave Clements
Clemens Blank
Bert Droesbeke
Jennifer Hillman-Jackson
Matúš Kalaš
Nikos Pechlivanis
Linelle Abueg
Santino Faack
Subina Mehta
Verena Moosmann
Igor Makunin
Fotis E. Psomopoulos
Ray Sajulga
Saskia Hiltemann
Peter van Heusden
Lucille Delisle
Matthias Bernt
Armin Dadras
Marie Crane
Mélanie Petera
Engy Nasr
Clea Siguret
Siyu Chen
Simon Bray
Torsten Seemann
Enis Afgan
Tarnima Omara
Nathan Dunn
Natalie Whitaker-Allen
Anthony Bretaudeau
Wolfgang Maier
Hélène Chiapello
Vini Salazar
Cristóbal Gallardo
Sophia Hampe
Mina Hojat Ansari
Michael Thang
Bérénice Batut
Teresa Müller
Helena Rasche
Daniela Brites
Miaomiao Zhou
Willem de Koning
William Durand
Simon Gladman
Gildas Le Corguillé
Timothy J. Griffin
Maria Doyle
Nate Coraor
Nuwan Goonasekera
Bazante Sanders
Anton Nekrutenko
Praveen Kumar
Pratik Jagtap
Anna Syme
Thoba Lose
Funding
These individuals or organisations provided funding support for the development of this resource
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Avans
ABRomics
ELIXIR Europe
The University of Melbourne
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
IFB
Australian BioCommons