microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Galo A. Goig
William Durand
Cristóbal Gallardo
Fotis E. Psomopoulos
Nicola Soranzo
Santino Faack
Maria Doyle
Mélanie Petera
Niall Beard
Igor Makunin
Bazante Sanders
Siyu Chen
Sophia Hampe
Xenia Morera Martínez
Polina Polunina
Anna Syme
Christine Oger
Willem de Koning
Clea Siguret
Bert Droesbeke
Daniela Brites
Nathan Dunn
Marie Crane
Dave Clements
Simon Bray
Björn Grüning
Nate Coraor
Valentin Loux
Hans-Rudolf Hotz
Vini Salazar
Nuwan Goonasekera
Bérénice Batut
Deepti Varshney
Michael Thang
Teresa Müller
Giuseppe Defazio
Wolfgang Maier
Stéphanie Robin
Anthony Bretaudeau
Alex Ostrovsky
Miaomiao Zhou
Lucille Delisle
Tarnima Omara
Mina Hojat Ansari
Mateo Boudet
Linelle Abueg
Delphine Lariviere
Paul Zierep
Saskia Hiltemann
Matúš Kalaš
James Johnson
Thoba Lose
Natalie Whitaker-Allen
Verena Moosmann
Hélène Chiapello
Torsten Seemann
Nikos Pechlivanis
Christoph Stritt
Pratik Jagtap
Matthias Bernt
Engy Nasr
Gildas Le Corguillé
Helena Rasche
Peter van Heusden
Anton Nekrutenko
Praveen Kumar
Tristan Reynolds
Subina Mehta
Enis Afgan
Ray Sajulga
Timothy J. Griffin
Simon Gladman
Emma Leith
Jennifer Hillman-Jackson
Armin Dadras
Clemens Blank
Funding
These individuals or organisations provided funding support for the development of this resource
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
IFB
Melbourne Bioinformatics
ABRomics
The University of Melbourne
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Australian BioCommons
Avans
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.