microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Saskia Hiltemann
Bazante Sanders
Hans-Rudolf Hotz
Alex Ostrovsky
Nate Coraor
Simon Gladman
Tarnima Omara
Pratik Jagtap
Stéphanie Robin
Daniela Brites
Lucille Delisle
Nathan Dunn
Maria Doyle
Teresa Müller
Giuseppe Defazio
Nuwan Goonasekera
Gildas Le Corguillé
Clemens Blank
Siyu Chen
Emma Leith
Nicola Soranzo
Matúš Kalaš
Enis Afgan
Polina Polunina
Verena Moosmann
Cristóbal Gallardo
Valentin Loux
Paul Zierep
Ray Sajulga
Wolfgang Maier
Christoph Stritt
Mateo Boudet
Torsten Seemann
Clea Siguret
Fotis E. Psomopoulos
Subina Mehta
William Durand
Vini Salazar
Anna Syme
Peter van Heusden
Sophia Hampe
Hélène Chiapello
Miaomiao Zhou
James Johnson
Deepti Varshney
Simon Bray
Armin Dadras
Willem de Koning
Engy Nasr
Tristan Reynolds
Matthias Bernt
Delphine Lariviere
Igor Makunin
Mina Hojat Ansari
Linelle Abueg
Santino Faack
Nikos Pechlivanis
Niall Beard
Dave Clements
Natalie Whitaker-Allen
Thoba Lose
Galo A. Goig
Anton Nekrutenko
Helena Rasche
Bert Droesbeke
Michael Thang
Jennifer Hillman-Jackson
Bérénice Batut
Christine Oger
Björn Grüning
Mélanie Petera
Praveen Kumar
Timothy J. Griffin
Marie Crane
Anthony Bretaudeau
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
ABRomics
Australian BioCommons
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
ELIXIR Europe
IFB
Avans