microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Mélanie Petera
Bazante Sanders
Dave Clements
Saskia Hiltemann
Anton Nekrutenko
Anna Syme
Ray Sajulga
Polina Polunina
Hans-Rudolf Hotz
Matthias Bernt
Tristan Reynolds
Teresa Müller
Siyu Chen
Verena Moosmann
Torsten Seemann
Lucille Delisle
Sophia Hampe
Peter van Heusden
Nate Coraor
Fotis E. Psomopoulos
Simon Bray
Nuwan Goonasekera
Timothy J. Griffin
Clemens Blank
Bérénice Batut
Helena Rasche
Galo A. Goig
Pratik Jagtap
James Johnson
Delphine Lariviere
Paul Zierep
Christine Oger
Wolfgang Maier
Praveen Kumar
Hélène Chiapello
Simon Gladman
Bert Droesbeke
Deepti Varshney
Nicola Soranzo
Jennifer Hillman-Jackson
Niall Beard
Vini Salazar
Christoph Stritt
Clea Siguret
Willem de Koning
Engy Nasr
Maria Doyle
Stéphanie Robin
Gildas Le Corguillé
Mina Hojat Ansari
Tarnima Omara
Linelle Abueg
Santino Faack
Valentin Loux
Giuseppe Defazio
Armin Dadras
Mateo Boudet
Thoba Lose
Daniela Brites
Igor Makunin
Björn Grüning
Enis Afgan
Anthony Bretaudeau
Subina Mehta
Michael Thang
Cristóbal Gallardo
Alex Ostrovsky
Natalie Whitaker-Allen
Miaomiao Zhou
Matúš Kalaš
Nikos Pechlivanis
Marie Crane
Emma Leith
William Durand
Nathan Dunn
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ABRomics
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
The University of Melbourne
Melbourne Bioinformatics
ELIXIR Europe
Australian BioCommons
Avans
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.