microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Mateo Boudet
Mélanie Petera
Willem de Koning
Bert Droesbeke
Sophia Hampe
Bérénice Batut
Cristóbal Gallardo
Gildas Le Corguillé
Marie Crane
Michael Thang
Tristan Reynolds
Maria Doyle
Thoba Lose
Torsten Seemann
Santino Faack
Paul Zierep
Deepti Varshney
Praveen Kumar
Nicola Soranzo
Clea Siguret
Hans-Rudolf Hotz
Engy Nasr
Simon Gladman
Timothy J. Griffin
Stéphanie Robin
Vini Salazar
Miaomiao Zhou
Dave Clements
Nikos Pechlivanis
James Johnson
Nathan Dunn
Daniela Brites
Pratik Jagtap
William Durand
Niall Beard
Bazante Sanders
Natalie Whitaker-Allen
Matthias Bernt
Igor Makunin
Lucille Delisle
Anton Nekrutenko
Teresa Müller
Alex Ostrovsky
Siyu Chen
Nuwan Goonasekera
Matúš Kalaš
Christoph Stritt
Mina Hojat Ansari
Helena Rasche
Fotis E. Psomopoulos
Armin Dadras
Polina Polunina
Jennifer Hillman-Jackson
Wolfgang Maier
Clemens Blank
Tarnima Omara
Simon Bray
Ray Sajulga
Anna Syme
Björn Grüning
Peter van Heusden
Anthony Bretaudeau
Valentin Loux
Linelle Abueg
Giuseppe Defazio
Christine Oger
Enis Afgan
Galo A. Goig
Subina Mehta
Emma Leith
Delphine Lariviere
Nate Coraor
Saskia Hiltemann
Verena Moosmann
Hélène Chiapello
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
ELIXIR Europe
Avans
IFB
The University of Melbourne
Australian BioCommons
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.