microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Vini Salazar
Timothy J. Griffin
Paul Zierep
Emma Leith
Giuseppe Defazio
Dave Clements
Deepti Varshney
Björn Grüning
Subina Mehta
Santino Faack
Verena Moosmann
Valentin Loux
Mateo Boudet
Nathan Dunn
James Johnson
Alex Ostrovsky
Thoba Lose
Anton Nekrutenko
Marie Crane
Willem de Koning
Mélanie Petera
Matthias Bernt
Christoph Stritt
Nikos Pechlivanis
Torsten Seemann
Clemens Blank
Stéphanie Robin
Armin Dadras
Christine Oger
Niall Beard
Jennifer Hillman-Jackson
Cristóbal Gallardo
Lucille Delisle
Mina Hojat Ansari
Helena Rasche
Simon Gladman
Nuwan Goonasekera
Siyu Chen
Maria Doyle
Galo A. Goig
Teresa Müller
Gildas Le Corguillé
Igor Makunin
Bert Droesbeke
Bérénice Batut
Nicola Soranzo
Linelle Abueg
Hans-Rudolf Hotz
Anna Syme
Enis Afgan
Natalie Whitaker-Allen
Michael Thang
Anthony Bretaudeau
Engy Nasr
Bazante Sanders
Clea Siguret
Hélène Chiapello
Saskia Hiltemann
Fotis E. Psomopoulos
Polina Polunina
Nate Coraor
Pratik Jagtap
Sophia Hampe
Praveen Kumar
Tarnima Omara
Daniela Brites
Miaomiao Zhou
Simon Bray
Tristan Reynolds
William Durand
Delphine Lariviere
Wolfgang Maier
Peter van Heusden
Ray Sajulga
Matúš Kalaš
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
Australian BioCommons
IFB
Avans
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ELIXIR Europe
ABRomics