microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Wolfgang Maier
Anthony Bretaudeau
Polina Polunina
Pratik Jagtap
Miaomiao Zhou
William Durand
Daniela Brites
Nuwan Goonasekera
Hans-Rudolf Hotz
Sophia Hampe
Helena Rasche
Matthias Bernt
Vini Salazar
Lucille Delisle
Bert Droesbeke
James Johnson
Mina Hojat Ansari
Torsten Seemann
Mélanie Petera
Willem de Koning
Anna Syme
Bazante Sanders
Emma Leith
Galo A. Goig
Niall Beard
Xenia Morera Martínez
Matúš Kalaš
Ray Sajulga
Giuseppe Defazio
Linelle Abueg
Igor Makunin
Gildas Le Corguillé
Clemens Blank
Björn Grüning
Christoph Stritt
Engy Nasr
Santino Faack
Praveen Kumar
Armin Dadras
Stéphanie Robin
Clea Siguret
Tristan Reynolds
Maria Doyle
Verena Moosmann
Deepti Varshney
Delphine Lariviere
Michael Thang
Alex Ostrovsky
Paul Zierep
Nicola Soranzo
Siyu Chen
Thoba Lose
Peter van Heusden
Enis Afgan
Jennifer Hillman-Jackson
Marie Crane
Natalie Whitaker-Allen
Anton Nekrutenko
Nathan Dunn
Hélène Chiapello
Saskia Hiltemann
Nikos Pechlivanis
Tarnima Omara
Christine Oger
Simon Bray
Simon Gladman
Bérénice Batut
Subina Mehta
Teresa Müller
Dave Clements
Timothy J. Griffin
Mateo Boudet
Valentin Loux
Fotis E. Psomopoulos
Nate Coraor
Cristóbal Gallardo
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
ELIXIR Europe
Avans
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
The University of Melbourne
Australian BioCommons
Melbourne Bioinformatics
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
IFB