microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Anthony Bretaudeau
Nikos Pechlivanis
Fotis E. Psomopoulos
Torsten Seemann
Helena Rasche
Simon Bray
Wolfgang Maier
Nathan Dunn
Björn Grüning
Willem de Koning
Deepti Varshney
Emma Leith
Timothy J. Griffin
Christoph Stritt
Igor Makunin
Delphine Lariviere
Bérénice Batut
Matthias Bernt
Miaomiao Zhou
Maria Doyle
William Durand
Alex Ostrovsky
Nicola Soranzo
Linelle Abueg
James Johnson
Saskia Hiltemann
Cristóbal Gallardo
Subina Mehta
Praveen Kumar
Hans-Rudolf Hotz
Tristan Reynolds
Pratik Jagtap
Thoba Lose
Valentin Loux
Jennifer Hillman-Jackson
Verena Moosmann
Tarnima Omara
Simon Gladman
Clemens Blank
Natalie Whitaker-Allen
Sophia Hampe
Mateo Boudet
Paul Zierep
Bazante Sanders
Teresa Müller
Siyu Chen
Niall Beard
Daniela Brites
Matúš Kalaš
Mina Hojat Ansari
Gildas Le Corguillé
Hélène Chiapello
Michael Thang
Peter van Heusden
Polina Polunina
Anna Syme
Marie Crane
Stéphanie Robin
Armin Dadras
Giuseppe Defazio
Anton Nekrutenko
Dave Clements
Galo A. Goig
Engy Nasr
Clea Siguret
Nuwan Goonasekera
Christine Oger
Nate Coraor
Santino Faack
Mélanie Petera
Vini Salazar
Ray Sajulga
Enis Afgan
Lucille Delisle
Bert Droesbeke
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Melbourne Bioinformatics
ABRomics
Avans
ELIXIR Europe
Australian BioCommons
The University of Melbourne
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
IFB