microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Ray Sajulga
Saskia Hiltemann
Nate Coraor
Engy Nasr
Sophia Hampe
Simon Gladman
Hélène Chiapello
Christine Oger
James Johnson
Valentin Loux
Nikos Pechlivanis
Pratik Jagtap
Cristóbal Gallardo
Hans-Rudolf Hotz
Dave Clements
Jennifer Hillman-Jackson
Anna Syme
Gildas Le Corguillé
Natalie Whitaker-Allen
Santino Faack
Willem de Koning
Christoph Stritt
Bérénice Batut
Nuwan Goonasekera
Niall Beard
Paul Zierep
Matúš Kalaš
Michael Thang
Galo A. Goig
Clea Siguret
Nicola Soranzo
Anthony Bretaudeau
Igor Makunin
Maria Doyle
Siyu Chen
Praveen Kumar
Wolfgang Maier
Peter van Heusden
Vini Salazar
Alex Ostrovsky
Armin Dadras
Helena Rasche
Stéphanie Robin
Xenia Morera Martínez
Nathan Dunn
Thoba Lose
Fotis E. Psomopoulos
William Durand
Deepti Varshney
Torsten Seemann
Björn Grüning
Mélanie Petera
Daniela Brites
Simon Bray
Tarnima Omara
Anton Nekrutenko
Emma Leith
Bert Droesbeke
Linelle Abueg
Mateo Boudet
Lucille Delisle
Clemens Blank
Timothy J. Griffin
Mina Hojat Ansari
Miaomiao Zhou
Enis Afgan
Verena Moosmann
Matthias Bernt
Polina Polunina
Teresa Müller
Bazante Sanders
Delphine Lariviere
Subina Mehta
Tristan Reynolds
Marie Crane
Giuseppe Defazio
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
Melbourne Bioinformatics
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Avans
Australian BioCommons