microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Emma Leith
Matthias Bernt
Ray Sajulga
Tristan Reynolds
Simon Bray
Valentin Loux
Polina Polunina
Linelle Abueg
Peter van Heusden
Helena Rasche
Björn Grüning
Nikos Pechlivanis
Armin Dadras
Nathan Dunn
Alex Ostrovsky
Torsten Seemann
Hans-Rudolf Hotz
Michael Thang
Clea Siguret
Willem de Koning
Santino Faack
Lucille Delisle
Marie Crane
Nuwan Goonasekera
Jennifer Hillman-Jackson
Verena Moosmann
Siyu Chen
Gildas Le Corguillé
Christoph Stritt
Hélène Chiapello
Daniela Brites
Deepti Varshney
Pratik Jagtap
Stéphanie Robin
Miaomiao Zhou
Niall Beard
William Durand
Nicola Soranzo
Nate Coraor
Galo A. Goig
Bérénice Batut
Mélanie Petera
Clemens Blank
Subina Mehta
Anna Syme
Saskia Hiltemann
Mina Hojat Ansari
Mateo Boudet
Natalie Whitaker-Allen
Giuseppe Defazio
Enis Afgan
Vini Salazar
Sophia Hampe
Wolfgang Maier
Maria Doyle
Tarnima Omara
Paul Zierep
Christine Oger
Cristóbal Gallardo
Bazante Sanders
Bert Droesbeke
Engy Nasr
Anthony Bretaudeau
Praveen Kumar
Simon Gladman
Timothy J. Griffin
Matúš Kalaš
Igor Makunin
Anton Nekrutenko
Thoba Lose
Teresa Müller
James Johnson
Dave Clements
Fotis E. Psomopoulos
Delphine Lariviere
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
Australian BioCommons
The University of Melbourne
Melbourne Bioinformatics
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Avans
IFB
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087