microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Peter van Heusden
Giuseppe Defazio
Nicola Soranzo
Anthony Bretaudeau
Clea Siguret
Björn Grüning
Mateo Boudet
Santino Faack
Dave Clements
Paul Zierep
Alex Ostrovsky
Polina Polunina
Matúš Kalaš
Sophia Hampe
Niall Beard
Thoba Lose
Christoph Stritt
Nate Coraor
Marie Crane
Cristóbal Gallardo
Hans-Rudolf Hotz
Vini Salazar
William Durand
Teresa Müller
Clemens Blank
Nathan Dunn
Linelle Abueg
Torsten Seemann
Maria Doyle
Siyu Chen
Verena Moosmann
Igor Makunin
Emma Leith
Bazante Sanders
Hélène Chiapello
Nuwan Goonasekera
Simon Bray
Wolfgang Maier
Bérénice Batut
Nikos Pechlivanis
Christine Oger
Deepti Varshney
Timothy J. Griffin
Gildas Le Corguillé
Natalie Whitaker-Allen
Jennifer Hillman-Jackson
Galo A. Goig
Praveen Kumar
Tristan Reynolds
Stéphanie Robin
Daniela Brites
Mélanie Petera
Ray Sajulga
Lucille Delisle
Anton Nekrutenko
Mina Hojat Ansari
Valentin Loux
Armin Dadras
Bert Droesbeke
Anna Syme
Saskia Hiltemann
James Johnson
Subina Mehta
Willem de Koning
Fotis E. Psomopoulos
Michael Thang
Miaomiao Zhou
Helena Rasche
Tarnima Omara
Matthias Bernt
Simon Gladman
Engy Nasr
Pratik Jagtap
Enis Afgan
Delphine Lariviere
Funding
These individuals or organisations provided funding support for the development of this resource
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
Avans
IFB
ELIXIR Europe
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
The University of Melbourne
ABRomics