microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Teresa Müller
Torsten Seemann
Bazante Sanders
Engy Nasr
Fotis E. Psomopoulos
Maria Doyle
Saskia Hiltemann
Cristóbal Gallardo
Bérénice Batut
Jennifer Hillman-Jackson
Simon Gladman
Marie Crane
Siyu Chen
Thoba Lose
Hélène Chiapello
Christine Oger
James Johnson
Matúš Kalaš
Valentin Loux
Matthias Bernt
Niall Beard
Hans-Rudolf Hotz
Verena Moosmann
Helena Rasche
Lucille Delisle
William Durand
Emma Leith
Delphine Lariviere
Timothy J. Griffin
Ray Sajulga
Miaomiao Zhou
Praveen Kumar
Nikos Pechlivanis
Alex Ostrovsky
Igor Makunin
Galo A. Goig
Nathan Dunn
Wolfgang Maier
Anna Syme
Christoph Stritt
Natalie Whitaker-Allen
Paul Zierep
Bert Droesbeke
Willem de Koning
Stéphanie Robin
Gildas Le Corguillé
Anthony Bretaudeau
Mateo Boudet
Mina Hojat Ansari
Tarnima Omara
Nuwan Goonasekera
Armin Dadras
Michael Thang
Björn Grüning
Nate Coraor
Linelle Abueg
Daniela Brites
Dave Clements
Giuseppe Defazio
Simon Bray
Santino Faack
Polina Polunina
Nicola Soranzo
Deepti Varshney
Peter van Heusden
Pratik Jagtap
Anton Nekrutenko
Sophia Hampe
Clea Siguret
Vini Salazar
Enis Afgan
Subina Mehta
Tristan Reynolds
Mélanie Petera
Clemens Blank
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ABRomics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Australian BioCommons
Avans
ELIXIR Europe
The University of Melbourne
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Melbourne Bioinformatics
IFB