microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Gildas Le Corguillé
Willem de Koning
Mina Hojat Ansari
Michael Thang
Linelle Abueg
Lucille Delisle
Giuseppe Defazio
Marie Crane
Nathan Dunn
Anna Syme
Björn Grüning
Matthias Bernt
Clea Siguret
Jennifer Hillman-Jackson
Dave Clements
Hans-Rudolf Hotz
Vini Salazar
Sophia Hampe
Bazante Sanders
Fotis E. Psomopoulos
Matúš Kalaš
Natalie Whitaker-Allen
Teresa Müller
Torsten Seemann
James Johnson
Mélanie Petera
Nikos Pechlivanis
Miaomiao Zhou
Santino Faack
Galo A. Goig
Nuwan Goonasekera
Timothy J. Griffin
Subina Mehta
Valentin Loux
William Durand
Tarnima Omara
Nicola Soranzo
Thoba Lose
Hélène Chiapello
Nate Coraor
Verena Moosmann
Siyu Chen
Polina Polunina
Anton Nekrutenko
Ray Sajulga
Anthony Bretaudeau
Christoph Stritt
Christine Oger
Igor Makunin
Bérénice Batut
Engy Nasr
Peter van Heusden
Saskia Hiltemann
Tristan Reynolds
Niall Beard
Simon Gladman
Simon Bray
Mateo Boudet
Cristóbal Gallardo
Deepti Varshney
Stéphanie Robin
Emma Leith
Enis Afgan
Delphine Lariviere
Paul Zierep
Alex Ostrovsky
Clemens Blank
Maria Doyle
Xenia Morera Martínez
Pratik Jagtap
Armin Dadras
Helena Rasche
Daniela Brites
Bert Droesbeke
Praveen Kumar
Wolfgang Maier
Funding
These individuals or organisations provided funding support for the development of this resource
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ABRomics
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ELIXIR Europe
The University of Melbourne
Australian BioCommons
Melbourne Bioinformatics
Avans