microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Xenia Morera Martínez
Linelle Abueg
Simon Bray
Gildas Le Corguillé
Bazante Sanders
Emma Leith
Giuseppe Defazio
Vini Salazar
Natalie Whitaker-Allen
Delphine Lariviere
Willem de Koning
James Johnson
Siyu Chen
Matthias Bernt
Igor Makunin
Engy Nasr
Pratik Jagtap
Mateo Boudet
Torsten Seemann
Mina Hojat Ansari
Nuwan Goonasekera
Thoba Lose
Fotis E. Psomopoulos
Hans-Rudolf Hotz
Nate Coraor
Peter van Heusden
Jennifer Hillman-Jackson
William Durand
Clemens Blank
Helena Rasche
Bert Droesbeke
Sophia Hampe
Anton Nekrutenko
Miaomiao Zhou
Ray Sajulga
Michael Thang
Tristan Reynolds
Mélanie Petera
Matúš Kalaš
Wolfgang Maier
Galo A. Goig
Maria Doyle
Simon Gladman
Tarnima Omara
Christoph Stritt
Praveen Kumar
Enis Afgan
Alex Ostrovsky
Niall Beard
Björn Grüning
Saskia Hiltemann
Daniela Brites
Timothy J. Griffin
Santino Faack
Christine Oger
Teresa Müller
Valentin Loux
Nikos Pechlivanis
Hélène Chiapello
Polina Polunina
Anna Syme
Lucille Delisle
Subina Mehta
Cristóbal Gallardo
Nathan Dunn
Marie Crane
Dave Clements
Nicola Soranzo
Clea Siguret
Stéphanie Robin
Bérénice Batut
Anthony Bretaudeau
Verena Moosmann
Deepti Varshney
Paul Zierep
Armin Dadras
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
Avans
Australian BioCommons
Melbourne Bioinformatics
ELIXIR Europe
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
IFB
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.