microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Mateo Boudet
Matthias Bernt
Daniela Brites
Niall Beard
Nuwan Goonasekera
Nicola Soranzo
Bert Droesbeke
Engy Nasr
Teresa Müller
Matúš Kalaš
Nathan Dunn
Torsten Seemann
Clea Siguret
James Johnson
Verena Moosmann
Maria Doyle
Valentin Loux
Ray Sajulga
Peter van Heusden
Saskia Hiltemann
Armin Dadras
Fotis E. Psomopoulos
Anton Nekrutenko
Marie Crane
Helena Rasche
Hélène Chiapello
Christoph Stritt
Thoba Lose
Björn Grüning
Pratik Jagtap
Cristóbal Gallardo
Paul Zierep
Jennifer Hillman-Jackson
Siyu Chen
Natalie Whitaker-Allen
Delphine Lariviere
Tristan Reynolds
Vini Salazar
Nikos Pechlivanis
Giuseppe Defazio
Mina Hojat Ansari
Subina Mehta
Igor Makunin
Clemens Blank
Simon Gladman
Galo A. Goig
Emma Leith
Wolfgang Maier
Tarnima Omara
Timothy J. Griffin
Bérénice Batut
Alex Ostrovsky
Simon Bray
Santino Faack
Sophia Hampe
Anna Syme
Lucille Delisle
Hans-Rudolf Hotz
Dave Clements
Michael Thang
Stéphanie Robin
Deepti Varshney
Christine Oger
Praveen Kumar
Nate Coraor
Polina Polunina
Enis Afgan
Gildas Le Corguillé
Linelle Abueg
Bazante Sanders
William Durand
Anthony Bretaudeau
Mélanie Petera
Miaomiao Zhou
Willem de Koning
Funding
These individuals or organisations provided funding support for the development of this resource
Australian BioCommons
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
Avans
The University of Melbourne
IFB
Melbourne Bioinformatics
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.