microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Bérénice Batut
Natalie Whitaker-Allen
Gildas Le Corguillé
Simon Gladman
Miaomiao Zhou
Tristan Reynolds
Lucille Delisle
Thoba Lose
Ray Sajulga
Bert Droesbeke
Christine Oger
Subina Mehta
Polina Polunina
Marie Crane
Nikos Pechlivanis
James Johnson
Daniela Brites
Nuwan Goonasekera
Saskia Hiltemann
Mina Hojat Ansari
Matthias Bernt
Maria Doyle
Alex Ostrovsky
Clemens Blank
Enis Afgan
Armin Dadras
Nate Coraor
Fotis E. Psomopoulos
Delphine Lariviere
Michael Thang
Timothy J. Griffin
Helena Rasche
Giuseppe Defazio
Cristóbal Gallardo
Sophia Hampe
Linelle Abueg
Nicola Soranzo
Tarnima Omara
Dave Clements
Mateo Boudet
Bazante Sanders
Valentin Loux
Siyu Chen
Stéphanie Robin
Pratik Jagtap
Deepti Varshney
Björn Grüning
Santino Faack
Peter van Heusden
Anton Nekrutenko
Hans-Rudolf Hotz
Engy Nasr
Teresa Müller
Anna Syme
Willem de Koning
Emma Leith
Wolfgang Maier
Clea Siguret
Hélène Chiapello
Praveen Kumar
William Durand
Matúš Kalaš
Igor Makunin
Mélanie Petera
Anthony Bretaudeau
Galo A. Goig
Niall Beard
Paul Zierep
Christoph Stritt
Verena Moosmann
Vini Salazar
Simon Bray
Torsten Seemann
Jennifer Hillman-Jackson
Nathan Dunn
Funding
These individuals or organisations provided funding support for the development of this resource
Melbourne Bioinformatics
IFB
The University of Melbourne
ABRomics
Australian BioCommons
Avans
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.