microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Praveen Kumar
Alex Ostrovsky
Bert Droesbeke
Verena Moosmann
Hans-Rudolf Hotz
James Johnson
Willem de Koning
Deepti Varshney
Anthony Bretaudeau
Nate Coraor
Pratik Jagtap
Vini Salazar
Siyu Chen
Anna Syme
Lucille Delisle
William Durand
Björn Grüning
Torsten Seemann
Clemens Blank
Igor Makunin
Tristan Reynolds
Simon Gladman
Hélène Chiapello
Niall Beard
Miaomiao Zhou
Bazante Sanders
Polina Polunina
Valentin Loux
Clea Siguret
Emma Leith
Subina Mehta
Engy Nasr
Giuseppe Defazio
Enis Afgan
Nicola Soranzo
Cristóbal Gallardo
Christine Oger
Michael Thang
Armin Dadras
Anton Nekrutenko
Teresa Müller
Santino Faack
Christoph Stritt
Matthias Bernt
Mateo Boudet
Simon Bray
Thoba Lose
Nuwan Goonasekera
Gildas Le Corguillé
Tarnima Omara
Linelle Abueg
Helena Rasche
Mélanie Petera
Natalie Whitaker-Allen
Fotis E. Psomopoulos
Wolfgang Maier
Saskia Hiltemann
Nikos Pechlivanis
Timothy J. Griffin
Nathan Dunn
Mina Hojat Ansari
Daniela Brites
Peter van Heusden
Matúš Kalaš
Delphine Lariviere
Maria Doyle
Stéphanie Robin
Sophia Hampe
Jennifer Hillman-Jackson
Marie Crane
Paul Zierep
Ray Sajulga
Bérénice Batut
Galo A. Goig
Dave Clements
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
IFB
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
Melbourne Bioinformatics
Australian BioCommons
ELIXIR Europe
Avans
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics