microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Igor Makunin
Alex Ostrovsky
Ray Sajulga
Lucille Delisle
Niall Beard
Peter van Heusden
Verena Moosmann
Fotis E. Psomopoulos
Bert Droesbeke
Vini Salazar
Linelle Abueg
Marie Crane
Thoba Lose
Helena Rasche
Praveen Kumar
Santino Faack
Dave Clements
Michael Thang
Tarnima Omara
Sophia Hampe
Paul Zierep
Nathan Dunn
Willem de Koning
Stéphanie Robin
Maria Doyle
Engy Nasr
Christine Oger
Hélène Chiapello
Emma Leith
Nikos Pechlivanis
Matúš Kalaš
Jennifer Hillman-Jackson
Björn Grüning
Bazante Sanders
Wolfgang Maier
Clea Siguret
Subina Mehta
Simon Bray
Valentin Loux
Galo A. Goig
Delphine Lariviere
Pratik Jagtap
James Johnson
Natalie Whitaker-Allen
Cristóbal Gallardo
Bérénice Batut
Nicola Soranzo
Armin Dadras
Christoph Stritt
Nate Coraor
Enis Afgan
Gildas Le Corguillé
Torsten Seemann
Daniela Brites
Teresa Müller
Anthony Bretaudeau
Deepti Varshney
William Durand
Hans-Rudolf Hotz
Miaomiao Zhou
Mina Hojat Ansari
Anton Nekrutenko
Nuwan Goonasekera
Anna Syme
Giuseppe Defazio
Simon Gladman
Clemens Blank
Polina Polunina
Siyu Chen
Matthias Bernt
Mélanie Petera
Tristan Reynolds
Saskia Hiltemann
Timothy J. Griffin
Mateo Boudet
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
IFB
Melbourne Bioinformatics
ELIXIR Europe
The University of Melbourne
Australian BioCommons
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ABRomics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.