microgalaxy
Tutorials covering microgalaxy
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data | |||||
| Making sense of a newly assembled genome | |||||
| Unicycler Assembly |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Checking expected species and contamination in bacterial isolate |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
Microbiome
Proteomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Metaproteomics tutorial | |||||
| metaQuantome 1: Data creation | |||||
| metaQuantome 2: Function | |||||
| metaQuantome 3: Taxonomy |
Sequence Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Galo A. Goig
Nathan Dunn
James Johnson
Stéphanie Robin
Tarnima Omara
William Durand
Alex Ostrovsky
Michael Thang
Teresa Müller
Santino Faack
Niall Beard
Giuseppe Defazio
Christine Oger
Ray Sajulga
Cristóbal Gallardo
Anton Nekrutenko
Christoph Stritt
Emma Leith
Praveen Kumar
Nicola Soranzo
Natalie Whitaker-Allen
Engy Nasr
Anthony Bretaudeau
Gildas Le Corguillé
Marie Crane
Björn Grüning
Daniela Brites
Hans-Rudolf Hotz
Bérénice Batut
Linelle Abueg
Xenia Morera Martínez
Mina Hojat Ansari
Pratik Jagtap
Jennifer Hillman-Jackson
Bert Droesbeke
Dave Clements
Clea Siguret
Tristan Reynolds
Matúš Kalaš
Siyu Chen
Armin Dadras
Verena Moosmann
Willem de Koning
Igor Makunin
Peter van Heusden
Clemens Blank
Matthias Bernt
Nate Coraor
Nuwan Goonasekera
Nikos Pechlivanis
Simon Bray
Bazante Sanders
Helena Rasche
Maria Doyle
Anna Syme
Polina Polunina
Subina Mehta
Enis Afgan
Delphine Lariviere
Torsten Seemann
Vini Salazar
Thoba Lose
Simon Gladman
Hélène Chiapello
Sophia Hampe
Deepti Varshney
Wolfgang Maier
Paul Zierep
Valentin Loux
Timothy J. Griffin
Lucille Delisle
Saskia Hiltemann
Fotis E. Psomopoulos
Mélanie Pétéra
Mateo Boudet
Miaomiao Zhou
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
Melbourne Bioinformatics
Australian BioCommons
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
IFB
Avans
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
ELIXIR Europe
ABRomics