Workflows
These workflows are associated with Metaproteomics tutorial
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
Metaproteomics_GTN
Last updated Feb 9, 2021
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["Input dataset"]; 1["Input dataset collection"]; 2["Input dataset"]; 3["Search GUI"]; 4["Peptide Shaker"]; 5["Query Tabular"]; 6["Unipept"]; 7["Unipept"]; 8["Query Tabular"]; 9["Query Tabular"]; 10["SQLite to tabular"]; 11["SQLite to tabular"]; 12["SQLite to tabular"]; 0 -->|output| 3; 1 -->|output| 3; 3 -->|searchgui_results| 4; 4 -->|output_psm| 5; 5 -->|output| 6; 5 -->|output| 7; 2 -->|output| 8; 6 -->|output_tsv| 8; 6 -->|output_tsv| 8; 4 -->|output_psm| 8; 4 -->|output_psm| 9; 7 -->|output_tsv| 9; 8 -->|sqlitedb| 10; 8 -->|sqlitedb| 11; 8 -->|sqlitedb| 12;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: