Workflows

These workflows are associated with Metaproteomics tutorial

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["Input dataset"];
  1["Input dataset collection"];
  2["Input dataset"];
  3["Search GUI"];
  4["Peptide Shaker"];
  5["Query Tabular"];
  6["Unipept"];
  7["Unipept"];
  8["Query Tabular"];
  9["Query Tabular"];
  10["SQLite to tabular"];
  11["SQLite to tabular"];
  12["SQLite to tabular"];
  0 -->|output| 3;
  1 -->|output| 3;
  3 -->|searchgui_results| 4;
  4 -->|output_psm| 5;
  5 -->|output| 6;
  5 -->|output| 7;
  2 -->|output| 8;
  6 -->|output_tsv| 8;
  6 -->|output_tsv| 8;
  4 -->|output_psm| 8;
  4 -->|output_psm| 9;
  7 -->|output_tsv| 9;
  8 -->|sqlitedb| 10;
  8 -->|sqlitedb| 11;
  8 -->|sqlitedb| 12;

	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: