These workflows are associated with Tree thinking for tuberculosis evolution and epidemiology

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Mtb phylogeny

Last updated Mar 16, 2022

Launch in Tutorial Mode question
License: None Specified, defaults to CC-BY-4.0
Tests: ❌ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nInput alignment"];
  style 0 stroke:#2c3143,stroke-width:4px;
  2["Estimate phylogeny with RAxML"];
  0 -->|output| 2;
  9f8ae577-c583-4a2d-b64d-14c25fb859d9["Output\nBest-scoring ML Tree"];
  2 --> 9f8ae577-c583-4a2d-b64d-14c25fb859d9;
  style 9f8ae577-c583-4a2d-b64d-14c25fb859d9 stroke:#2c3143,stroke-width:4px;
  2 --> bdb8cf2f-b553-4a96-8b55-38b4b499ab88;
  style bdb8cf2f-b553-4a96-8b55-38b4b499ab88 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL