Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Clare Sloggett avatar Clare Sloggettorcid logoNicola Soranzo avatar Nicola SoranzoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoJohn Chilton avatar John ChiltonMarie Josse avatar Marie JosseAysam Guerler avatar Aysam Guerlerorcid logoWendi Bacon avatar Wendi BaconStéphanie Legras avatar Stéphanie LegrasErik Schill avatar Erik SchillLain Pavot avatar Lain PavotDave B. avatar Dave B.Youri Hoogstrate avatar Youri HoogstrateEstelle Ancelet avatar Estelle Anceletorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon Brayorcid logoMartin Čech avatar Martin Čechorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJohan Gustafsson avatar Johan GustafssonHervé Ménager avatar Hervé Ménagerorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruNitesh Turaga avatar Nitesh Turagaorcid logoCameron Hyde avatar Cameron HydeAssunta DeSanto avatar Assunta DeSantoCyril Monjeaud avatar Cyril Monjeaudorcid logoBérénice Batut avatar Bérénice Batutorcid logoClemens Blank avatar Clemens BlankLoraine Guéguen avatar Loraine GuéguenMatthias Bernt avatar Matthias BerntDannon Baker avatar Dannon Bakerorcid logoJohn Davis avatar John Davisorcid logoPaul Zierep avatar Paul ZierepRoss Lazarus avatar Ross Lazarusorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoNate Coraor avatar Nate Coraororcid logoAlex Ostrovsky avatar Alex Ostrovsky

Funding

These individuals or organisations provided funding support for the development of this resource