Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks
Setting up a dev Onedata instance

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batut

Contributors

This material was contributed to by:

orcid logoCameron Hyde avatar Cameron HydeHervé Ménager avatar Hervé Ménagerorcid logoAlex Ostrovsky avatar Alex OstrovskyWilliam Durand avatar William DurandSimon Bray avatar Simon Brayorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia HiltemannRoss Lazarus avatar Ross LazarusAssunta DeSanto avatar Assunta DeSantoorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruAysam Guerler avatar Aysam GuerlerYouri Hoogstrate avatar Youri Hoogstrateorcid logoJohn Davis avatar John Davisorcid logoMartin Čech avatar Martin ČechDannon Baker avatar Dannon Bakerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClemens Blank avatar Clemens Blankorcid logoNicola Soranzo avatar Nicola SoranzoMatthias Bernt avatar Matthias BerntEstelle Ancelet avatar Estelle Anceletorcid logoBérénice Batut avatar Bérénice BatutLoraine Guéguen avatar Loraine GuéguenClare Sloggett avatar Clare Sloggettorcid logoPaul Zierep avatar Paul ZierepErik Schill avatar Erik SchillNiall Beard avatar Niall Beardorcid logoYvan Le Bras avatar Yvan Le BrasCyril Monjeaud avatar Cyril MonjeaudDave B. avatar Dave B.Stéphanie Legras avatar Stéphanie Legrasorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoArmin Dadras avatar Armin DadrasNitesh Turaga avatar Nitesh TuragaGildas Le Corguillé avatar Gildas Le CorguilléMarie Josse avatar Marie Josseorcid logoNate Coraor avatar Nate CoraorLain Pavot avatar Lain Pavotorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn Grüningorcid logoJohn Chilton avatar John Chilton

Funding

These individuals or organisations provided funding support for the development of this resource