galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Accessing IIIF from within Galaxy
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows history
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
history
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoBert Droesbeke avatar Bert Droesbekeorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMartin Čech avatar Martin Čechorcid logoToby Hodges avatar Toby Hodgesorcid logoNate Coraor avatar Nate Coraororcid logoArmin Dadras avatar Armin Dadrasorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoDeepti Varshney avatar Deepti VarshneyAdelaide Rhodes avatar Adelaide RhodesEkaterina Polkh avatar Ekaterina PolkhYo Yehudi avatar Yo Yehudiorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoMaria Doyle avatar Maria Doyleorcid logoBérénice Batut avatar Bérénice BatutDavid López avatar David LópezBoris Depoortere avatar Boris DepoortereDaniela Butano avatar Daniela ButanoElizabeth Sheets avatar Elizabeth SheetsCharles Overbeck avatar Charles Overbeckorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoJohn Chilton avatar John Chiltonorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoNadia Goué avatar Nadia Gouéorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClea Siguret avatar Clea Siguretorcid logoDave Clements avatar Dave ClementsJon Trow avatar Jon TrowAnne Pajon avatar Anne PajonRita Gautschy avatar Rita Gautschyorcid logoMatthias Bernt avatar Matthias BerntAnton Nekrutenko avatar Anton NekrutenkoBartosz Walkowicz avatar Bartosz Walkowiczorcid logoTeresa Müller avatar Teresa Müllerorcid logoMarius van den Beek avatar Marius van den BeekNiall Beard avatar Niall BeardMateusz Kuzak avatar Mateusz KuzakGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon BrayAvani Khadilkar avatar Avani Khadilkarorcid logoLaila Los avatar Laila LosOleg Zharkov avatar Oleg ZharkovWilliam Durand avatar William Durandorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoWendi Bacon avatar Wendi BaconEnis Afgan avatar Enis Afganorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanMehmet Tekman avatar Mehmet TekmanNic Herndon avatar Nic Herndonorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoLucille Delisle avatar Lucille DelisleMiguel Roncoroni avatar Miguel RoncoroniAysam Guerler avatar Aysam Guerlerorcid logoSimon Gladman avatar Simon Gladmanorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Australian BioCommons
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BioNT
Co-funded by the European Union
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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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de.KCD
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IFB
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MWK
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UFR
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ELIXIR Europe
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ABRomics
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Melbourne Bioinformatics