galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Accessing IIIF from within Galaxy
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows history
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
history
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoDave Clements avatar Dave ClementsDaniela Butano avatar Daniela ButanoBoris Depoortere avatar Boris Depoortereorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoNicola Soranzo avatar Nicola SoranzoEkaterina Polkh avatar Ekaterina Polkhorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJohn Chilton avatar John Chiltonorcid logoDeepti Varshney avatar Deepti VarshneyAvani Khadilkar avatar Avani Khadilkarorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoLucille Delisle avatar Lucille Delisleorcid logoClea Siguret avatar Clea SiguretEnis Afgan avatar Enis AfganMarius van den Beek avatar Marius van den BeekNic Herndon avatar Nic Herndonorcid logoLaila Los avatar Laila LosGildas Le Corguillé avatar Gildas Le Corguilléorcid logoŁukasz Opioła avatar Łukasz OpiołaCharles Overbeck avatar Charles OverbeckAnton Nekrutenko avatar Anton Nekrutenkoorcid logoNadia Goué avatar Nadia GouéNiall Beard avatar Niall BeardSimon Bray avatar Simon Brayorcid logoBert Droesbeke avatar Bert DroesbekeAysam Guerler avatar Aysam Guerlerorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoArmin Dadras avatar Armin Dadrasorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosMateusz Kuzak avatar Mateusz Kuzakorcid logoMartin Čech avatar Martin Čechorcid logoNate Coraor avatar Nate CoraorMiguel Roncoroni avatar Miguel Roncoroniorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanAdelaide Rhodes avatar Adelaide RhodesElizabeth Sheets avatar Elizabeth Sheetsorcid logoCristóbal Gallardo avatar Cristóbal GallardoBartosz Walkowicz avatar Bartosz Walkowiczorcid logoWendi Bacon avatar Wendi BaconRita Gautschy avatar Rita Gautschyorcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria Doyleorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena Rascheorcid logoLisanna Paladin avatar Lisanna PaladinJon Trow avatar Jon Troworcid logoSimon Gladman avatar Simon GladmanAnne Pajon avatar Anne PajonWilliam Durand avatar William DurandYo Yehudi avatar Yo Yehudiorcid logoToby Hodges avatar Toby Hodgesorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
de.KCD
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
ELIXIR Europe
Logo
Melbourne Bioinformatics
Logo
UFR
Logo
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Logo
MWK
Logo
de.NBI
Logo
ABRomics
Logo
IFB
Logo
Australian BioCommons
Logo
BioNT
Co-funded by the European Union
Logo
The University of Melbourne