galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoBert Droesbeke avatar Bert Droesbekeorcid logoLisanna Paladin avatar Lisanna PaladinJon Trow avatar Jon TrowAnton Nekrutenko avatar Anton Nekrutenkoorcid logoArmin Dadras avatar Armin Dadrasorcid logoJohn Chilton avatar John Chiltonorcid logoDaniela Schneider avatar Daniela SchneiderGildas Le Corguillé avatar Gildas Le Corguilléorcid logoLaila Los avatar Laila LosMiguel Roncoroni avatar Miguel Roncoroniorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMaria Doyle avatar Maria Doyleorcid logoNate Coraor avatar Nate Coraororcid logoWolfgang Maier avatar Wolfgang MaierAvani Khadilkar avatar Avani Khadilkarorcid logoSimon Gladman avatar Simon GladmanAnne Pajon avatar Anne Pajonorcid logoLucille Delisle avatar Lucille DelisleElizabeth Sheets avatar Elizabeth SheetsSimon Bray avatar Simon BrayNic Herndon avatar Nic Herndonorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMartin Čech avatar Martin ČechEkaterina Polkh avatar Ekaterina PolkhYo Yehudi avatar Yo YehudiNiall Beard avatar Niall Beardorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoToby Hodges avatar Toby HodgesMarius van den Beek avatar Marius van den Beekorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanMateusz Kuzak avatar Mateusz Kuzakorcid logoYvan Le Bras avatar Yvan Le BrasEnis Afgan avatar Enis Afganorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn GrüningAdelaide Rhodes avatar Adelaide Rhodesorcid logoDave Clements avatar Dave Clementsorcid logoAnne Fouilloux avatar Anne FouillouxBoris Depoortere avatar Boris DepoortereAysam Guerler avatar Aysam Guerlerorcid logoTeresa Müller avatar Teresa Müllerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena RascheCharles Overbeck avatar Charles OverbeckWilliam Durand avatar William DurandDaniela Butano avatar Daniela ButanoBartosz Walkowicz avatar Bartosz Walkowiczorcid logoNadia Goué avatar Nadia Gouéorcid logoWendi Bacon avatar Wendi Bacon

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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BioNT
Co-funded by the European Union
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne
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Australian BioCommons
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de.NBI
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IFB
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Melbourne Bioinformatics
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.