galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoSimon Gladman avatar Simon Gladmanorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJohn Chilton avatar John Chiltonorcid logoDave Clements avatar Dave ClementsAysam Guerler avatar Aysam Guerlerorcid logoAnthony Bretaudeau avatar Anthony BretaudeauEkaterina Polkh avatar Ekaterina Polkhorcid logoLucille Delisle avatar Lucille Delisleorcid logoMaria Doyle avatar Maria DoyleWilliam Durand avatar William Durandorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoLisanna Paladin avatar Lisanna PaladinJon Trow avatar Jon Troworcid logoWendi Bacon avatar Wendi Baconorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia HiltemannMarius van den Beek avatar Marius van den Beekorcid logoHelena Rasche avatar Helena RascheBartosz Walkowicz avatar Bartosz Walkowiczorcid logoBjörn Grüning avatar Björn GrüningMateusz Kuzak avatar Mateusz Kuzakorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoTeresa Müller avatar Teresa Müllerorcid logoMartin Čech avatar Martin ČechAdelaide Rhodes avatar Adelaide Rhodesorcid logoToby Hodges avatar Toby Hodgesorcid logoCristóbal Gallardo avatar Cristóbal GallardoAnne Pajon avatar Anne Pajonorcid logoDelphine Lariviere avatar Delphine LariviereCharles Overbeck avatar Charles OverbeckDaniela Butano avatar Daniela ButanoAvani Khadilkar avatar Avani KhadilkarMiguel Roncoroni avatar Miguel Roncoroniorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoNicola Soranzo avatar Nicola SoranzoNic Herndon avatar Nic Herndonorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoBérénice Batut avatar Bérénice BatutElizabeth Sheets avatar Elizabeth SheetsNiall Beard avatar Niall Beardorcid logoNadia Goué avatar Nadia GouéBoris Depoortere avatar Boris Depoortereorcid logoClea Siguret avatar Clea Siguretorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanYo Yehudi avatar Yo Yehudiorcid logoLaila Los avatar Laila LosGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon Brayorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoBert Droesbeke avatar Bert DroesbekeAnton Nekrutenko avatar Anton Nekrutenkoorcid logoWolfgang Maier avatar Wolfgang MaierEnis Afgan avatar Enis Afganorcid logoNate Coraor avatar Nate Coraor

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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The University of Melbourne
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ABRomics
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IFB
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ELIXIR Europe
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UFR
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de.NBI
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Australian BioCommons
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BioNT
Co-funded by the European Union