galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Accessing IIIF from within Galaxy
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows history
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
history
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal GallardoCharles Overbeck avatar Charles OverbeckEkaterina Polkh avatar Ekaterina PolkhMiguel Roncoroni avatar Miguel RoncoroniNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSimon Gladman avatar Simon Gladmanorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoWendi Bacon avatar Wendi Baconorcid logoMaria Doyle avatar Maria DoyleWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoNadia Goué avatar Nadia GouéYo Yehudi avatar Yo Yehudiorcid logoNate Coraor avatar Nate Coraororcid logoDelphine Lariviere avatar Delphine LariviereBoris Depoortere avatar Boris Depoortereorcid logoNicola Soranzo avatar Nicola SoranzoAysam Guerler avatar Aysam Guerlerorcid logoBjörn Grüning avatar Björn Grüningorcid logoToby Hodges avatar Toby Hodgesorcid logoLaila Los avatar Laila Losorcid logoAnthony Bretaudeau avatar Anthony BretaudeauJon Trow avatar Jon TrowDaniela Butano avatar Daniela ButanoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohn Chilton avatar John ChiltonAnton Nekrutenko avatar Anton Nekrutenkoorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosAdelaide Rhodes avatar Adelaide RhodesAnne Pajon avatar Anne PajonBartosz Walkowicz avatar Bartosz WalkowiczRita Gautschy avatar Rita Gautschyorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoTeresa Müller avatar Teresa MüllerEnis Afgan avatar Enis Afganorcid logoLucille Delisle avatar Lucille Delisleorcid logoClea Siguret avatar Clea Siguretorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoDave Clements avatar Dave ClementsAvani Khadilkar avatar Avani KhadilkarSimon Bray avatar Simon Brayorcid logoMartin Čech avatar Martin Čechorcid logoAhmed Hamid Awan avatar Ahmed Hamid Awanorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoBérénice Batut avatar Bérénice BatutMateusz Kuzak avatar Mateusz Kuzakorcid logoBert Droesbeke avatar Bert DroesbekeNic Herndon avatar Nic HerndonMarius van den Beek avatar Marius van den BeekElizabeth Sheets avatar Elizabeth Sheetsorcid logoArmin Dadras avatar Armin Dadrasorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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ABRomics
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BioNT
Co-funded by the European Union
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Australian BioCommons
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Melbourne Bioinformatics
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de.KCD
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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UFR
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IFB
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The University of Melbourne
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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MWK