galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

Marius van den Beek avatar Marius van den Beekorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoBérénice Batut avatar Bérénice Batutorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJohn Chilton avatar John ChiltonAdelaide Rhodes avatar Adelaide Rhodesorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanBoris Depoortere avatar Boris Depoortereorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoDeepti Varshney avatar Deepti VarshneyMiguel Roncoroni avatar Miguel Roncoroniorcid logoDaniela Schneider avatar Daniela SchneiderJon Trow avatar Jon TrowMateusz Kuzak avatar Mateusz Kuzakorcid logoBjörn Grüning avatar Björn Grüningorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoClea Siguret avatar Clea SiguretAvani Khadilkar avatar Avani Khadilkarorcid logoToby Hodges avatar Toby HodgesGildas Le Corguillé avatar Gildas Le CorguilléAnne Pajon avatar Anne PajonEnis Afgan avatar Enis AfganWilliam Durand avatar William Durandorcid logoMaria Doyle avatar Maria Doyleorcid logoWendi Bacon avatar Wendi BaconElizabeth Sheets avatar Elizabeth SheetsAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoŁukasz Opioła avatar Łukasz OpiołaYo Yehudi avatar Yo YehudiNiall Beard avatar Niall BeardEkaterina Polkh avatar Ekaterina Polkhorcid logoNadia Goué avatar Nadia GouéAysam Guerler avatar Aysam Guerlerorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoWolfgang Maier avatar Wolfgang MaierBartosz Walkowicz avatar Bartosz WalkowiczCharles Overbeck avatar Charles Overbeckorcid logoLucille Delisle avatar Lucille DelisleDaniela Butano avatar Daniela Butanoorcid logoTeresa Müller avatar Teresa Müllerorcid logoLaila Los avatar Laila Losorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoDave Clements avatar Dave Clementsorcid logoSimon Gladman avatar Simon GladmanNic Herndon avatar Nic Herndonorcid logoNate Coraor avatar Nate Coraororcid logoMartin Čech avatar Martin Čech

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
ABRomics
Logo
The University of Melbourne
Logo
de.NBI
Logo
BioNT
Co-funded by the European Union
Logo
IFB
Logo
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
ELIXIR Europe
Logo
Melbourne Bioinformatics
Logo
Australian BioCommons
Logo
UFR