galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

William Durand avatar William Durandorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoWolfgang Maier avatar Wolfgang MaierJon Trow avatar Jon TrowAnne Pajon avatar Anne PajonBartosz Walkowicz avatar Bartosz Walkowiczorcid logoNadia Goué avatar Nadia Gouéorcid logoMartin Čech avatar Martin Čechorcid logoTeresa Müller avatar Teresa MüllerGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAhmed Hamid Awan avatar Ahmed Hamid Awanorcid logoHelena Rasche avatar Helena Rascheorcid logoDeepti Varshney avatar Deepti VarshneyMiguel Roncoroni avatar Miguel Roncoroniorcid logoNate Coraor avatar Nate CoraorYo Yehudi avatar Yo Yehudiorcid logoJohn Chilton avatar John ChiltonAnton Nekrutenko avatar Anton NekrutenkoEkaterina Polkh avatar Ekaterina Polkhorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDaniela Schneider avatar Daniela SchneiderNiall Beard avatar Niall Beardorcid logoBert Droesbeke avatar Bert DroesbekeBoris Depoortere avatar Boris Depoortereorcid logoLisanna Paladin avatar Lisanna PaladinDaniela Butano avatar Daniela Butanoorcid logoLucille Delisle avatar Lucille Delisleorcid logoDave Clements avatar Dave Clementsorcid logoToby Hodges avatar Toby HodgesEnis Afgan avatar Enis AfganSimon Bray avatar Simon Brayorcid logoWendi Bacon avatar Wendi BaconAdelaide Rhodes avatar Adelaide RhodesAysam Guerler avatar Aysam GuerlerCharles Overbeck avatar Charles Overbeckorcid logoClea Siguret avatar Clea Siguretorcid logoDelphine Lariviere avatar Delphine LariviereAvani Khadilkar avatar Avani Khadilkarorcid logoŁukasz Opioła avatar Łukasz OpiołaElizabeth Sheets avatar Elizabeth Sheetsorcid logoLaila Los avatar Laila Losorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBjörn Grüning avatar Björn GrüningMarius van den Beek avatar Marius van den Beekorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice BatutNic Herndon avatar Nic Herndonorcid logoSimon Gladman avatar Simon GladmanMateusz Kuzak avatar Mateusz Kuzakorcid logoMaria Doyle avatar Maria Doyleorcid logoArmin Dadras avatar Armin Dadras

Funding

These individuals or organisations provided funding support for the development of this resource

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BioNT
Co-funded by the European Union
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Melbourne Bioinformatics
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ABRomics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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de.NBI
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UFR
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Australian BioCommons
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ELIXIR Europe
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The University of Melbourne
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IFB