galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Accessing IIIF from within Galaxy
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows history
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
history
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoToby Hodges avatar Toby Hodgesorcid logoLaila Los avatar Laila Losorcid logoMartin Čech avatar Martin ČechEkaterina Polkh avatar Ekaterina PolkhWilliam Durand avatar William Durandorcid logoMarius van den Beek avatar Marius van den Beekorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoArmin Dadras avatar Armin Dadrasorcid logoSimon Gladman avatar Simon GladmanBartosz Walkowicz avatar Bartosz WalkowiczRita Gautschy avatar Rita Gautschyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoDave Clements avatar Dave Clementsorcid logoDeepti Varshney avatar Deepti VarshneyBoris Depoortere avatar Boris DepoortereSimon Bray avatar Simon BrayGildas Le Corguillé avatar Gildas Le CorguilléAdelaide Rhodes avatar Adelaide Rhodesorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoMaria Doyle avatar Maria Doyleorcid logoJohn Chilton avatar John Chiltonorcid logoHelena Rasche avatar Helena RascheMiguel Roncoroni avatar Miguel Roncoroniorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoLucille Delisle avatar Lucille DelisleAvani Khadilkar avatar Avani Khadilkarorcid logoYvan Le Bras avatar Yvan Le BrasMateusz Kuzak avatar Mateusz Kuzakorcid logoNadia Goué avatar Nadia GouéYo Yehudi avatar Yo Yehudiorcid logoAhmed Hamid Awan avatar Ahmed Hamid Awanorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea Siguretorcid logoBert Droesbeke avatar Bert DroesbekeNic Herndon avatar Nic Herndonorcid logoCristóbal Gallardo avatar Cristóbal GallardoAysam Guerler avatar Aysam Guerlerorcid logoBérénice Batut avatar Bérénice BatutNiall Beard avatar Niall BeardElizabeth Sheets avatar Elizabeth SheetsCharles Overbeck avatar Charles Overbeckorcid logoWendi Bacon avatar Wendi BaconJon Trow avatar Jon Troworcid logoNate Coraor avatar Nate Coraororcid logoWolfgang Maier avatar Wolfgang MaierAnne Pajon avatar Anne Pajonorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoTeresa Müller avatar Teresa MüllerEnis Afgan avatar Enis AfganAnton Nekrutenko avatar Anton NekrutenkoDaniela Butano avatar Daniela Butanoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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IFB
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UFR
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MWK
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BioNT
Co-funded by the European Union
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Australian BioCommons
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Melbourne Bioinformatics
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The University of Melbourne
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de.KCD
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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de.NBI