galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

orcid logoDaniela Schneider avatar Daniela SchneiderElizabeth Sheets avatar Elizabeth SheetsAvani Khadilkar avatar Avani KhadilkarNic Herndon avatar Nic HerndonEkaterina Polkh avatar Ekaterina PolkhYo Yehudi avatar Yo Yehudiorcid logoMartin Čech avatar Martin Čechorcid logoClea Siguret avatar Clea SiguretWilliam Durand avatar William Durandorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoNate Coraor avatar Nate Coraororcid logoBérénice Batut avatar Bérénice BatutJon Trow avatar Jon Troworcid logoSimon Gladman avatar Simon GladmanCharles Overbeck avatar Charles OverbeckSimon Bray avatar Simon Brayorcid logoJohn Chilton avatar John Chiltonorcid logoWolfgang Maier avatar Wolfgang MaierAdelaide Rhodes avatar Adelaide Rhodesorcid logoAnne Fouilloux avatar Anne FouillouxMateusz Kuzak avatar Mateusz Kuzakorcid logoCristóbal Gallardo avatar Cristóbal GallardoNiall Beard avatar Niall Beardorcid logoToby Hodges avatar Toby Hodgesorcid logoYvan Le Bras avatar Yvan Le BrasAnton Nekrutenko avatar Anton Nekrutenkoorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanDaniela Butano avatar Daniela ButanoBartosz Walkowicz avatar Bartosz Walkowiczorcid logoLaila Los avatar Laila LosAysam Guerler avatar Aysam Guerlerorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoTeresa Müller avatar Teresa MüllerMiguel Roncoroni avatar Miguel Roncoroniorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoArmin Dadras avatar Armin Dadrasorcid logoMaria Doyle avatar Maria DoyleAnne Pajon avatar Anne PajonMarius van den Beek avatar Marius van den Beekorcid logoLucille Delisle avatar Lucille Delisleorcid logoHelena Rasche avatar Helena RascheEnis Afgan avatar Enis Afganorcid logoBjörn Grüning avatar Björn Grüningorcid logoDave Clements avatar Dave Clementsorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoSaskia Hiltemann avatar Saskia HiltemannBoris Depoortere avatar Boris Depoortereorcid logoWendi Bacon avatar Wendi BaconGildas Le Corguillé avatar Gildas Le Corguilléorcid logoNadia Goué avatar Nadia Goué

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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IFB
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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BioNT
Co-funded by the European Union
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UFR
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ELIXIR Europe
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Australian BioCommons
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The University of Melbourne
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ABRomics