galaxy-interface

Tutorials covering galaxy-interface

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Annotate, prepare tests and publish Galaxy workflows in workflow registries
workflows FAIR
Automating Galaxy workflows using the command line
workflows variant-analysis covid19
Creating high resolution images of Galaxy Workflows
workflows
Creating, Editing and Importing Galaxy Workflows
workflows
Downloading and Deleting Data in Galaxy
Exporting to Onedata remote
storage
Extracting Workflows from Histories
workflows
Galaxy workflows in Dockstore
Getting data into Galaxy
Getting started with Onedata distributed storage
storage
Group tags for complex experimental designs
Importing (uploading) data from Onedata
storage
InterMine integration with Galaxy
gmod intermine
JupyterLab in Galaxy
interactive-tools
Name tags for following complex histories
Onedata user-owned storage
storage
RStudio in Galaxy
interactive-tools
Rule Based Uploader
collections tags
Rule Based Uploader: Advanced
collections tags
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19
Searching Your History
Submitting sequence data to ENA
covid19
Understanding Galaxy history system
Use Jupyter notebooks in Galaxy
Using Workflow Parameters
workflows
Using dataset collections
collections
Workflow Reports
workflows

Contributors

This material was contributed to by:

Elizabeth Sheets avatar Elizabeth Sheetsorcid logoNicola Soranzo avatar Nicola SoranzoAysam Guerler avatar Aysam Guerlerorcid logoAhmed Hamid Awan avatar Ahmed Hamid AwanYo Yehudi avatar Yo Yehudiorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoMaria Doyle avatar Maria DoyleNiall Beard avatar Niall BeardNic Herndon avatar Nic Herndonorcid logoLisanna Paladin avatar Lisanna PaladinAnton Nekrutenko avatar Anton Nekrutenkoorcid logoWendi Bacon avatar Wendi BaconSimon Bray avatar Simon Brayorcid logoJohn Chilton avatar John Chiltonorcid logoDeepti Varshney avatar Deepti VarshneyCharles Overbeck avatar Charles Overbeckorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoBérénice Batut avatar Bérénice Batutorcid logoLucille Delisle avatar Lucille DelisleGildas Le Corguillé avatar Gildas Le CorguilléAdelaide Rhodes avatar Adelaide RhodesBoris Depoortere avatar Boris DepoortereMiguel Roncoroni avatar Miguel Roncoroniorcid logoHelena Rasche avatar Helena Rascheorcid logoDelphine Lariviere avatar Delphine LariviereDaniela Butano avatar Daniela Butanoorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDave Clements avatar Dave ClementsEnis Afgan avatar Enis Afganorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoWolfgang Maier avatar Wolfgang MaierAnne Pajon avatar Anne Pajonorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoNadia Goué avatar Nadia Gouéorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoLaila Los avatar Laila LosJon Trow avatar Jon Troworcid logoClea Siguret avatar Clea SiguretMateusz Kuzak avatar Mateusz Kuzakorcid logoBjörn Grüning avatar Björn GrüningBartosz Walkowicz avatar Bartosz Walkowiczorcid logoNate Coraor avatar Nate CoraorMarius van den Beek avatar Marius van den Beekorcid logoMartin Čech avatar Martin Čechorcid logoSimon Gladman avatar Simon GladmanEkaterina Polkh avatar Ekaterina PolkhAvani Khadilkar avatar Avani Khadilkarorcid logoArmin Dadras avatar Armin DadrasWilliam Durand avatar William Durandorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoToby Hodges avatar Toby Hodges

Funding

These individuals or organisations provided funding support for the development of this resource

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The University of Melbourne
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BioNT
Co-funded by the European Union
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ABRomics
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ELIXIR Europe
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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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IFB
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Melbourne Bioinformatics