ecology

Tutorials covering ecology

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Object detection with YOLO
Object detection with YOLO
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Biodiversity data exploration
Champs blocs indicators
Checking expected species and contamination in bacterial isolate
Cleaning GBIF data for the use in Ecology
Cleaning GBIF data using OpenRefine
Compute and analyze biodiversity metrics with PAMPA toolsuite
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Data submission using ENA upload Tool
Ecoregionalization workflow tutorial
Ecoregionalization workflow tutorial
From NDVI data with OpenEO to time series visualisation with Holoviews
Life Traits Ecoregionalization workflow
Marine Omics identifying biosynthetic gene clusters
Metabarcoding/eDNA through Obitools
Obis marine indicators
Phylodiversity analysis quick tutorial
Phylodiversity analysis quick tutorial
Preparing genomic data for phylogeny reconstruction
QGIS Web Feature Services
RAD-Seq Reference-based data analysis
RAD-Seq de-novo data analysis
RAD-Seq to construct genetic maps
Regional GAM
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos
Sentinel 2 biodiversity
Species distribution modeling
Taxonomic Analysis of eDNA
Visualization of Climate Data using NetCDF xarray Map Plotting
Visualize EBV cube data with Panoply netCDF viewer

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Contributors

This material was contributed to by:

Sujai Kumar avatar Sujai Kumarorcid logoWendi Bacon avatar Wendi Baconorcid logoPauline Seguineau avatar Pauline SeguineauDominique Pelletier avatar Dominique PelletierEric Coissac avatar Eric CoissacHaswane Chei avatar Haswane CheiSoumya Jha avatar Soumya JhaNajat Amoukou avatar Najat AmoukouArthur Barreau avatar Arthur BarreauBethan Manley avatar Bethan Manleyorcid logoAnkerl Yassine avatar Ankerl Yassineorcid logoTristan Reynolds avatar Tristan ReynoldsJean Le Cras avatar Jean Le Crasorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoGlinez Thibaud avatar Glinez ThibaudSimon Benateau avatar Simon BenateauKevin Payet avatar Kevin PayetMohammad Joudy avatar Mohammad Joudyorcid logoBrigida Gallone avatar Brigida GalloneWilliam Durand avatar William DurandElisa Michon avatar Elisa MichonGildas Le Corguillé avatar Gildas Le CorguilléVerena Moosmann avatar Verena MoosmannJean-Baptiste Mihoub avatar Jean-Baptiste Mihouborcid logoPaul Zierep avatar Paul Ziereporcid logoBjörn Grüning avatar Björn GrüningJohn Beliveau avatar John Beliveauorcid logoCristóbal Gallardo avatar Cristóbal GallardoElouan Le Mestric avatar Elouan Le Mestricorcid logoBérénice Batut avatar Bérénice Batutorcid logoMartin Čech avatar Martin ČechNiall Beard avatar Niall Beardorcid logoWolfgang Maier avatar Wolfgang MaierMiguel Roncoroni avatar Miguel RoncoroniOlivier Norvez avatar Olivier NorvezClara Urfer avatar Clara Urferorcid logoColine Royaux avatar Coline Royauxorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoHelena Rasche avatar Helena Rascheorcid logoNadine Le Bris avatar Nadine Le BrisFrédéric Boyer avatar Frédéric BoyerTanguy Genthon avatar Tanguy GenthonSophie Pamerlon avatar Sophie Pamerlonorcid logoNate Coraor avatar Nate Coraororcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoClea Siguret avatar Clea SiguretLaura Russell avatar Laura RussellPerrine Jégousse avatar Perrine Jégousseorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMarie Josse avatar Marie Josse

Funding

These individuals or organisations provided funding support for the development of this resource