ecology

Tutorials covering ecology

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Biodiversity data exploration
Champs blocs indicators
Checking expected species and contamination in bacterial isolate
Cleaning GBIF data for the use in Ecology
Cleaning GBIF data using OpenRefine
Compute and analyze biodiversity metrics with PAMPA toolsuite
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Data submission using ENA upload Tool
Ecoregionalization workflow tutorial
Ecoregionalization workflow tutorial
From NDVI data with OpenEO to time series visualisation with Holoviews
Life Traits Ecoregionalization workflow
Marine Omics identifying biosynthetic gene clusters
Metabarcoding/eDNA through Obitools
Obis marine indicators
Phylodiversity analysis quick tutorial
Phylodiversity analysis quick tutorial
Preparing genomic data for phylogeny reconstruction
QGIS Web Feature Services
RAD-Seq Reference-based data analysis
RAD-Seq de-novo data analysis
RAD-Seq to construct genetic maps
Regional GAM
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos
Sentinel 2 biodiversity
Species distribution modeling
Taxonomic Analysis of eDNA
Visualization of Climate Data using NetCDF xarray Map Plotting
Visualize EBV cube data with Panoply netCDF viewer
Object detection with YOLO
Object detection with YOLO

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Contributors

This material was contributed to by:

John Beliveau avatar John BeliveauMohammad Joudy avatar Mohammad JoudySimon Benateau avatar Simon Benateauorcid logoYvan Le Bras avatar Yvan Le BrasPerrine Jégousse avatar Perrine Jégousseorcid logoHelena Rasche avatar Helena Rascheorcid logoMartin Čech avatar Martin ČechJean Le Cras avatar Jean Le Crasorcid logoCristóbal Gallardo avatar Cristóbal GallardoNajat Amoukou avatar Najat AmoukouLaura Russell avatar Laura Russellorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoTristan Reynolds avatar Tristan ReynoldsNiall Beard avatar Niall BeardVerena Moosmann avatar Verena MoosmannHaswane Chei avatar Haswane CheiClara Urfer avatar Clara UrferMiguel Roncoroni avatar Miguel Roncoroniorcid logoNate Coraor avatar Nate Coraororcid logoColine Royaux avatar Coline RoyauxEric Coissac avatar Eric CoissacSujai Kumar avatar Sujai KumarSoumya Jha avatar Soumya Jhaorcid logoPauline Seguineau avatar Pauline Seguineauorcid logoSaskia Hiltemann avatar Saskia HiltemannElisa Michon avatar Elisa Michonorcid logoPaul Zierep avatar Paul ZierepOlivier Norvez avatar Olivier Norvezorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnkerl Yassine avatar Ankerl YassineJean-Baptiste Mihoub avatar Jean-Baptiste Mihouborcid logoAnthony Bretaudeau avatar Anthony BretaudeauBethan Manley avatar Bethan ManleyArthur Barreau avatar Arthur BarreauGildas Le Corguillé avatar Gildas Le CorguilléKevin Payet avatar Kevin Payetorcid logoBjörn Grüning avatar Björn GrüningWilliam Durand avatar William DurandFrédéric Boyer avatar Frédéric BoyerTanguy Genthon avatar Tanguy Genthonorcid logoBrigida Gallone avatar Brigida GalloneDominique Pelletier avatar Dominique Pelletierorcid logoDaniela Schneider avatar Daniela SchneiderSophie Pamerlon avatar Sophie PamerlonMarie Josse avatar Marie Josseorcid logoGlinez Thibaud avatar Glinez ThibaudElouan Le Mestric avatar Elouan Le Mestricorcid logoWendi Bacon avatar Wendi Baconorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea Siguretorcid logoBérénice Batut avatar Bérénice Batutorcid logoNadine Le Bris avatar Nadine Le Bris

Funding

These individuals or organisations provided funding support for the development of this resource