ecology

Tutorials covering ecology

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Biodiversity data exploration
Champs blocs indicators
Checking expected species and contamination in bacterial isolate
Cleaning GBIF data for the use in Ecology
Cleaning GBIF data using OpenRefine
Compute and analyze biodiversity metrics with PAMPA toolsuite
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Data submission using ENA upload Tool
Ecoregionalization workflow tutorial
Ecoregionalization workflow tutorial
From NDVI data with OpenEO to time series visualisation with Holoviews
Life Traits Ecoregionalization workflow
Marine Omics identifying biosynthetic gene clusters
Metabarcoding/eDNA through Obitools
Obis marine indicators
Phylodiversity analysis quick tutorial
Phylodiversity analysis quick tutorial
Preparing genomic data for phylogeny reconstruction
QGIS Web Feature Services
RAD-Seq Reference-based data analysis
RAD-Seq de-novo data analysis
RAD-Seq to construct genetic maps
Regional GAM
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos
Sentinel 2 biodiversity
Species distribution modeling
Taxonomic Analysis of eDNA
Visualization of Climate Data using NetCDF xarray Map Plotting
Visualize EBV cube data with Panoply netCDF viewer
Object detection with YOLO
Object detection with YOLO

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Contributors

This material was contributed to by:

orcid logoDaniela Schneider avatar Daniela Schneiderorcid logoWendi Bacon avatar Wendi Baconorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn Grüningorcid logoGlinez Thibaud avatar Glinez ThibaudClara Urfer avatar Clara Urferorcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola SoranzoWilliam Durand avatar William DurandSoumya Jha avatar Soumya JhaMarie Josse avatar Marie Josseorcid logoAnkerl Yassine avatar Ankerl YassineFrédéric Boyer avatar Frédéric Boyerorcid logoMartin Čech avatar Martin Čechorcid logoWolfgang Maier avatar Wolfgang MaierSujai Kumar avatar Sujai Kumarorcid logoNate Coraor avatar Nate Coraororcid logoAnne Fouilloux avatar Anne FouillouxLaura Russell avatar Laura RussellBethan Manley avatar Bethan ManleyMohammad Joudy avatar Mohammad Joudyorcid logoBrigida Gallone avatar Brigida Galloneorcid logoPauline Seguineau avatar Pauline SeguineauArthur Barreau avatar Arthur Barreauorcid logoSaskia Hiltemann avatar Saskia HiltemannElouan Le Mestric avatar Elouan Le Mestricorcid logoAnthony Bretaudeau avatar Anthony BretaudeauKevin Payet avatar Kevin PayetNiall Beard avatar Niall BeardDominique Pelletier avatar Dominique Pelletierorcid logoYvan Le Bras avatar Yvan Le BrasJohn Beliveau avatar John BeliveauEric Coissac avatar Eric Coissacorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoColine Royaux avatar Coline RoyauxSophie Pamerlon avatar Sophie PamerlonVerena Moosmann avatar Verena Moosmannorcid logoPaul Zierep avatar Paul ZierepSimon Benateau avatar Simon BenateauOlivier Norvez avatar Olivier NorvezGildas Le Corguillé avatar Gildas Le CorguilléTanguy Genthon avatar Tanguy GenthonJean-Baptiste Mihoub avatar Jean-Baptiste MihoubJean Le Cras avatar Jean Le Crasorcid logoNadine Le Bris avatar Nadine Le BrisNajat Amoukou avatar Najat Amoukouorcid logoHelena Rasche avatar Helena RascheMiguel Roncoroni avatar Miguel RoncoroniPerrine Jégousse avatar Perrine JégousseElisa Michon avatar Elisa Michonorcid logoTristan Reynolds avatar Tristan ReynoldsHaswane Chei avatar Haswane Chei

Funding

These individuals or organisations provided funding support for the development of this resource