ecology

Tutorials covering ecology

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Audio data annotation with NEAL (Nature + Energy Audio labeler)
Biodiversity data exploration
Champs blocs indicators
Checking expected species and contamination in bacterial isolate
Cleaning GBIF data for the use in Ecology
Cleaning GBIF data using OpenRefine
Compute and analyze biodiversity metrics with PAMPA toolsuite
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Data submission using ENA upload Tool
Ecoregionalization workflow tutorial
Ecoregionalization workflow tutorial
From NDVI data with OpenEO to time series visualisation with Holoviews
Life Traits Ecoregionalization workflow
Marine Omics identifying biosynthetic gene clusters
Metabarcoding/eDNA through Obitools
Obis marine indicators
Phylodiversity analysis quick tutorial
Phylodiversity analysis quick tutorial
Preparing genomic data for phylogeny reconstruction
QGIS Web Feature Services
RAD-Seq Reference-based data analysis
RAD-Seq de-novo data analysis
RAD-Seq to construct genetic maps
Regional GAM
Sentinel 2 biodiversity
Species distribution modeling
Taxonomic Analysis of eDNA
Visualization of Climate Data using NetCDF xarray Map Plotting
Visualize EBV cube data with Panoply netCDF viewer

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Contributors

This material was contributed to by:

Jean-Baptiste Mihoub avatar Jean-Baptiste MihoubMiguel Roncoroni avatar Miguel RoncoroniSoumya Jha avatar Soumya JhaSimon Benateau avatar Simon Benateauorcid logoPaul Zierep avatar Paul Ziereporcid logoColine Royaux avatar Coline Royauxorcid logoGlinez Thibaud avatar Glinez Thibaudorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoWendi Bacon avatar Wendi BaconEric Coissac avatar Eric Coissacorcid logoHelena Rasche avatar Helena Rascheorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoDaniela Schneider avatar Daniela SchneiderJohn Beliveau avatar John BeliveauNiall Beard avatar Niall BeardLaura Russell avatar Laura Russellorcid logoBjörn Grüning avatar Björn GrüningVerena Moosmann avatar Verena MoosmannFrédéric Boyer avatar Frédéric BoyerHaswane Chei avatar Haswane Cheiorcid logoYvan Le Bras avatar Yvan Le BrasElisa Michon avatar Elisa MichonMarie Josse avatar Marie JosseSophie Pamerlon avatar Sophie Pamerlonorcid logoClea Siguret avatar Clea Siguretorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNicola Soranzo avatar Nicola SoranzoElouan Le Mestric avatar Elouan Le Mestricorcid logoBrigida Gallone avatar Brigida GalloneTanguy Genthon avatar Tanguy GenthonSujai Kumar avatar Sujai Kumarorcid logoWolfgang Maier avatar Wolfgang MaierJean Le Cras avatar Jean Le Crasorcid logoAnkerl Yassine avatar Ankerl Yassineorcid logoAnne Fouilloux avatar Anne FouillouxOlivier Norvez avatar Olivier NorvezClara Urfer avatar Clara UrferDominique Pelletier avatar Dominique PelletierGildas Le Corguillé avatar Gildas Le CorguilléBethan Manley avatar Bethan ManleyNajat Amoukou avatar Najat AmoukouWilliam Durand avatar William Durandorcid logoPauline Seguineau avatar Pauline Seguineau

Funding

These individuals or organisations provided funding support for the development of this resource