dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

Hervé Ménager avatar Hervé MénagerGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSaskia Hiltemann avatar Saskia HiltemannWilliam Durand avatar William Durandorcid logoClemens Blank avatar Clemens BlankMarie Josse avatar Marie JosseErik Schill avatar Erik Schillorcid logoCameron Hyde avatar Cameron Hydeorcid logoNate Coraor avatar Nate Coraororcid logoJohn Chilton avatar John Chiltonorcid logoYvan Le Bras avatar Yvan Le BrasDenys Savchenko avatar Denys SavchenkoMatthias Bernt avatar Matthias Berntorcid logoBjörn Grüning avatar Björn GrüningLain Pavot avatar Lain Pavotorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruDannon Baker avatar Dannon BakerNiall Beard avatar Niall Beardorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoPaul Zierep avatar Paul ZierepSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin Dadrasorcid logoBérénice Batut avatar Bérénice BatutYouri Hoogstrate avatar Youri Hoogstrateorcid logoJohn Davis avatar John Davisorcid logoWendi Bacon avatar Wendi Baconorcid logoAndrei Variu avatar Andrei Variuorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoCristóbal Gallardo avatar Cristóbal GallardoStéphanie Legras avatar Stéphanie LegrasAssunta DeSanto avatar Assunta DeSantoClare Sloggett avatar Clare Sloggettorcid logoJohan Gustafsson avatar Johan GustafssonAysam Guerler avatar Aysam GuerlerDavid López avatar David LópezDave B. avatar Dave B.Estelle Ancelet avatar Estelle AnceletLoraine Guéguen avatar Loraine GuéguenRoss Lazarus avatar Ross LazarusCyril Monjeaud avatar Cyril MonjeaudNitesh Turaga avatar Nitesh Turagaorcid logoMartin Čech avatar Martin Čech

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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UFR
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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ELIXIR Europe
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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de.NBI