dev

Tutorials covering dev

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

Dave B. avatar Dave B.orcid logoAndrei Variu avatar Andrei VariuNiall Beard avatar Niall Beardorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSaskia Hiltemann avatar Saskia HiltemannAssunta DeSanto avatar Assunta DeSantoorcid logoJohn Chilton avatar John ChiltonMatthias Bernt avatar Matthias Berntorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohn Davis avatar John DavisClare Sloggett avatar Clare SloggettAysam Guerler avatar Aysam GuerlerWilliam Durand avatar William DurandDenys Savchenko avatar Denys Savchenkoorcid logoArmin Dadras avatar Armin Dadrasorcid logoMartin Čech avatar Martin Čechorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoNate Coraor avatar Nate CoraorDavid López avatar David LópezSimon Bray avatar Simon Brayorcid logoPaul Zierep avatar Paul ZierepDannon Baker avatar Dannon Bakerorcid logoWendi Bacon avatar Wendi BaconGildas Le Corguillé avatar Gildas Le Corguilléorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoHelena Rasche avatar Helena RascheRoss Lazarus avatar Ross Lazarusorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoAlex Ostrovsky avatar Alex OstrovskyHervé Ménager avatar Hervé Ménagerorcid logoClemens Blank avatar Clemens BlankNitesh Turaga avatar Nitesh TuragaYouri Hoogstrate avatar Youri HoogstrateLain Pavot avatar Lain PavotLoraine Guéguen avatar Loraine GuéguenStéphanie Legras avatar Stéphanie Legrasorcid logoBjörn Grüning avatar Björn GrüningEstelle Ancelet avatar Estelle AnceletMarie Josse avatar Marie JosseCyril Monjeaud avatar Cyril MonjeaudErik Schill avatar Erik Schillorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
Logo
UFR
Logo
ELIXIR Europe
Logo
de.NBI