dev

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Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Understanding Galaxy Data Managers
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

orcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAndrei Variu avatar Andrei VariuLain Pavot avatar Lain Pavotorcid logoBérénice Batut avatar Bérénice BatutAssunta DeSanto avatar Assunta DeSantoorcid logoMatthias Bernt avatar Matthias BerntHervé Ménager avatar Hervé MénagerStéphanie Legras avatar Stéphanie Legrasorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoHelena Rasche avatar Helena RascheDavid López avatar David Lópezorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoPaul Zierep avatar Paul Ziereporcid logoWendi Bacon avatar Wendi Baconorcid logoYvan Le Bras avatar Yvan Le BrasNitesh Turaga avatar Nitesh Turagaorcid logoJohn Davis avatar John DavisRoss Lazarus avatar Ross Lazarusorcid logoClemens Blank avatar Clemens BlankLoraine Guéguen avatar Loraine Guéguenorcid logoArmin Dadras avatar Armin DadrasDave B. avatar Dave B.orcid logoJohn Chilton avatar John ChiltonGildas Le Corguillé avatar Gildas Le Corguilléorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang MaierEstelle Ancelet avatar Estelle AnceletSimon Bray avatar Simon BrayErik Schill avatar Erik SchillDannon Baker avatar Dannon BakerClare Sloggett avatar Clare SloggettAysam Guerler avatar Aysam GuerlerCyril Monjeaud avatar Cyril Monjeaudorcid logoMartin Čech avatar Martin Čechorcid logoŁukasz Opioła avatar Łukasz OpiołaWilliam Durand avatar William DurandDenys Savchenko avatar Denys Savchenkoorcid logoBjörn Grüning avatar Björn GrüningNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia HiltemannYouri Hoogstrate avatar Youri Hoogstrateorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoNate Coraor avatar Nate Coraor

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.