dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Understanding Galaxy Data Managers
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul Ziereporcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoArmin Dadras avatar Armin DadrasLain Pavot avatar Lain PavotDave B. avatar Dave B.Estelle Ancelet avatar Estelle AnceletNitesh Turaga avatar Nitesh TuragaStéphanie Legras avatar Stéphanie Legrasorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruLoraine Guéguen avatar Loraine Guéguenorcid logoNicola Soranzo avatar Nicola SoranzoDenys Savchenko avatar Denys Savchenkoorcid logoBérénice Batut avatar Bérénice BatutWilliam Durand avatar William DurandClare Sloggett avatar Clare Sloggettorcid logoClemens Blank avatar Clemens Blankorcid logoCameron Hyde avatar Cameron HydeDannon Baker avatar Dannon Bakerorcid logoJohn Davis avatar John Davisorcid logoHelena Rasche avatar Helena RascheAysam Guerler avatar Aysam Guerlerorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony BretaudeauErik Schill avatar Erik Schillorcid logoMatthias Bernt avatar Matthias Berntorcid logoJohn Chilton avatar John ChiltonHervé Ménager avatar Hervé MénagerRoss Lazarus avatar Ross Lazarusorcid logoCristóbal Gallardo avatar Cristóbal GallardoGildas Le Corguillé avatar Gildas Le CorguilléNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin ČechDavid López avatar David LópezSimon Bray avatar Simon Brayorcid logoBjörn Grüning avatar Björn GrüningAssunta DeSanto avatar Assunta DeSantoYouri Hoogstrate avatar Youri Hoogstrateorcid logoWendi Bacon avatar Wendi Baconorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoYvan Le Bras avatar Yvan Le BrasCyril Monjeaud avatar Cyril Monjeaudorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoAndrei Variu avatar Andrei Variuorcid logoNate Coraor avatar Nate Coraor

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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UFR