dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoMarie Josse avatar Marie JosseNitesh Turaga avatar Nitesh TuragaCyril Monjeaud avatar Cyril Monjeaudorcid logoJohn Davis avatar John DavisHervé Ménager avatar Hervé MénagerDannon Baker avatar Dannon Bakerorcid logoArmin Dadras avatar Armin Dadrasorcid logoJohan Gustafsson avatar Johan GustafssonYouri Hoogstrate avatar Youri Hoogstrateorcid logoNate Coraor avatar Nate Coraororcid logoClemens Blank avatar Clemens BlankGildas Le Corguillé avatar Gildas Le CorguilléEstelle Ancelet avatar Estelle AnceletAssunta DeSanto avatar Assunta DeSantoorcid logoSaskia Hiltemann avatar Saskia HiltemannErik Schill avatar Erik SchillSimon Bray avatar Simon BrayLoraine Guéguen avatar Loraine Guéguenorcid logoCristóbal Gallardo avatar Cristóbal GallardoDave B. avatar Dave B.orcid logoNicola Soranzo avatar Nicola SoranzoAysam Guerler avatar Aysam GuerlerWilliam Durand avatar William Durandorcid logoPaul Zierep avatar Paul Ziereporcid logoGianmauro Cuccuru avatar Gianmauro CuccuruDavid López avatar David LópezDenys Savchenko avatar Denys SavchenkoNiall Beard avatar Niall Beardorcid logoMatthias Bernt avatar Matthias Berntorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoWendi Bacon avatar Wendi BaconStéphanie Legras avatar Stéphanie LegrasLain Pavot avatar Lain Pavotorcid logoBérénice Batut avatar Bérénice BatutRoss Lazarus avatar Ross Lazarusorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoCameron Hyde avatar Cameron Hydeorcid logoAndrei Variu avatar Andrei Variuorcid logoMartin Čech avatar Martin Čechorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJohn Chilton avatar John ChiltonClare Sloggett avatar Clare Sloggettorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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UFR
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR Europe