dev

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

Dannon Baker avatar Dannon Bakerorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoCameron Hyde avatar Cameron HydeAssunta DeSanto avatar Assunta DeSantoorcid logoArmin Dadras avatar Armin Dadrasorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice BatutRoss Lazarus avatar Ross Lazarusorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoYvan Le Bras avatar Yvan Le BrasCyril Monjeaud avatar Cyril MonjeaudDenys Savchenko avatar Denys SavchenkoSimon Bray avatar Simon Brayorcid logoAlex Ostrovsky avatar Alex OstrovskyStéphanie Legras avatar Stéphanie Legrasorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNate Coraor avatar Nate CoraorGildas Le Corguillé avatar Gildas Le CorguilléWilliam Durand avatar William DurandYouri Hoogstrate avatar Youri HoogstrateNiall Beard avatar Niall BeardDave B. avatar Dave B.Matthias Bernt avatar Matthias BerntAysam Guerler avatar Aysam Guerlerorcid logoClemens Blank avatar Clemens Blankorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoPaul Zierep avatar Paul ZierepDavid López avatar David Lópezorcid logoAndrei Variu avatar Andrei Variuorcid logoMartin Čech avatar Martin Čechorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruNitesh Turaga avatar Nitesh Turagaorcid logoHelena Rasche avatar Helena RascheMarie Josse avatar Marie JosseClare Sloggett avatar Clare Sloggettorcid logoAnthony Bretaudeau avatar Anthony BretaudeauErik Schill avatar Erik SchillLain Pavot avatar Lain PavotHervé Ménager avatar Hervé Ménagerorcid logoJohn Davis avatar John Davisorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoJohn Chilton avatar John ChiltonEstelle Ancelet avatar Estelle AnceletLoraine Guéguen avatar Loraine Guéguen

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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de.NBI
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.