dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

Lain Pavot avatar Lain Pavotorcid logoŁukasz Opioła avatar Łukasz OpiołaCyril Monjeaud avatar Cyril MonjeaudStéphanie Legras avatar Stéphanie LegrasHervé Ménager avatar Hervé MénagerAysam Guerler avatar Aysam Guerlerorcid logoHelena Rasche avatar Helena RascheDave B. avatar Dave B.orcid logoCameron Hyde avatar Cameron Hydeorcid logoClemens Blank avatar Clemens Blankorcid logoMartin Čech avatar Martin ČechNiall Beard avatar Niall Beardorcid logoJohn Davis avatar John DavisSimon Bray avatar Simon Brayorcid logoAndrei Variu avatar Andrei VariuMarie Josse avatar Marie JosseDenys Savchenko avatar Denys SavchenkoDavid López avatar David Lópezorcid logoYvan Le Bras avatar Yvan Le BrasAssunta DeSanto avatar Assunta DeSantoClare Sloggett avatar Clare Sloggettorcid logoBjörn Grüning avatar Björn GrüningDannon Baker avatar Dannon BakerErik Schill avatar Erik SchillNitesh Turaga avatar Nitesh Turagaorcid logoCristóbal Gallardo avatar Cristóbal GallardoYouri Hoogstrate avatar Youri HoogstrateRoss Lazarus avatar Ross Lazarusorcid logoBérénice Batut avatar Bérénice BatutMatthias Bernt avatar Matthias Berntorcid logoWendi Bacon avatar Wendi Baconorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William Durandorcid logoNicola Soranzo avatar Nicola SoranzoEstelle Ancelet avatar Estelle Anceletorcid logoNate Coraor avatar Nate CoraorGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJohn Chilton avatar John Chiltonorcid logoArmin Dadras avatar Armin DadrasLoraine Guéguen avatar Loraine Guéguenorcid logoPaul Zierep avatar Paul Ziereporcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoJohan Gustafsson avatar Johan Gustafsson

Funding

These individuals or organisations provided funding support for the development of this resource

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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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de.NBI
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UFR
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.