dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

Niall Beard avatar Niall BeardHervé Ménager avatar Hervé MénagerCyril Monjeaud avatar Cyril Monjeaudorcid logoAlex Ostrovsky avatar Alex OstrovskyNitesh Turaga avatar Nitesh TuragaClare Sloggett avatar Clare Sloggettorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoŁukasz Opioła avatar Łukasz OpiołaMatthias Bernt avatar Matthias Berntorcid logoJohn Chilton avatar John Chiltonorcid logoBérénice Batut avatar Bérénice BatutEstelle Ancelet avatar Estelle Anceletorcid logoCameron Hyde avatar Cameron HydeYouri Hoogstrate avatar Youri HoogstrateErik Schill avatar Erik SchillStéphanie Legras avatar Stéphanie LegrasSimon Bray avatar Simon BrayLoraine Guéguen avatar Loraine GuéguenAssunta DeSanto avatar Assunta DeSantoorcid logoCristóbal Gallardo avatar Cristóbal GallardoDannon Baker avatar Dannon Bakerorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoMartin Čech avatar Martin ČechGildas Le Corguillé avatar Gildas Le Corguilléorcid logoClemens Blank avatar Clemens BlankLain Pavot avatar Lain Pavotorcid logoAndrei Variu avatar Andrei VariuDave B. avatar Dave B.Marie Josse avatar Marie Josseorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoJohn Davis avatar John Davisorcid logoPaul Zierep avatar Paul ZierepDavid López avatar David Lópezorcid logoNate Coraor avatar Nate Coraororcid logoWendi Bacon avatar Wendi BaconRoss Lazarus avatar Ross Lazarusorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin DadrasWilliam Durand avatar William Durandorcid logoBjörn Grüning avatar Björn GrüningDenys Savchenko avatar Denys SavchenkoAysam Guerler avatar Aysam Guerler

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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de.NBI
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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UFR