dev

Tutorials covering dev

Material

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Development in Galaxy

Lesson Slides Hands-on Recordings Input dataset Workflows
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Architecture 01 - Galaxy Ecosystem and Projects
Architecture 02 - Galaxy Project Management and Contribution
Architecture 03 - Galaxy Architecture Principles
Architecture 04 - Galaxy Files and Directory Structure
Architecture 05 - Galaxy Web Frameworks
Architecture 06 - Dependency Injection in Galaxy
Architecture 07 - Galaxy Task Management with Celery
Architecture 08 - Galaxy Application Components: Models, Managers, and Services
Architecture 09 - Galaxy Plugin Architecture
Architecture 10 - Galaxy File Sources Architecture
Architecture 11 - Galaxy Markdown Architecture
Architecture 12 - Galaxy Client Architecture
Architecture 13 - Galaxy Dependencies Management
Architecture 14 - Galaxy Startup Process
Architecture 15 - Galaxy Production Deployment
Architecture 16 - Galaxy Testing
Contributing a New Feature to Galaxy Core
Contributing to BioBlend as a developer
Creating Galaxy tools from Conda Through Deployment
Data source integration
Debugging Galaxy
Galaxy Interactive Tools
Galaxy Interactive Tours
Galaxy Webhooks
Generic plugins
JavaScript plugins
Prerequisites for building software/conda packages
Scripting Galaxy using the API and BioBlend
Setting up a dev Onedata instance
storage
Tool Dependencies and Conda
Tool Dependencies and Containers
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts
Writing Automated Tests for Galaxy
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Contributors

This material was contributed to by:

orcid logoJohn Chilton avatar John Chiltonorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoClemens Blank avatar Clemens Blankorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoAndrei Variu avatar Andrei VariuMatthias Bernt avatar Matthias BerntErik Schill avatar Erik SchillCyril Monjeaud avatar Cyril MonjeaudYouri Hoogstrate avatar Youri HoogstrateWilliam Durand avatar William DurandStéphanie Legras avatar Stéphanie Legrasorcid logoNate Coraor avatar Nate CoraorAysam Guerler avatar Aysam GuerlerDave B. avatar Dave B.Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMarie Josse avatar Marie Josseorcid logoBjörn Grüning avatar Björn Grüningorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruLain Pavot avatar Lain Pavotorcid logoArmin Dadras avatar Armin DadrasDannon Baker avatar Dannon BakerEstelle Ancelet avatar Estelle AnceletClare Sloggett avatar Clare Sloggettorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoCameron Hyde avatar Cameron Hydeorcid logoJohn Davis avatar John DavisAssunta DeSanto avatar Assunta DeSantoSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoPaul Zierep avatar Paul ZierepNitesh Turaga avatar Nitesh TuragaRoss Lazarus avatar Ross Lazarusorcid logoBérénice Batut avatar Bérénice BatutHervé Ménager avatar Hervé Ménagerorcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoYvan Le Bras avatar Yvan Le BrasDavid López avatar David Lópezorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoWendi Bacon avatar Wendi BaconDenys Savchenko avatar Denys SavchenkoNiall Beard avatar Niall BeardLoraine Guéguen avatar Loraine Guéguenorcid logoMartin Čech avatar Martin Čech

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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OSCARS
The OSCARS project has received funding from the European Commission’s Horizon Europe Research and Innovation programme under grant agreement No. 101129751
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ACME
This tutorial is part of a project that has received funding from the European Union’s Horizon Europe Research and innovation programme under Grant Agreement No 101131928.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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UFR
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de.NBI