assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura LeroiBrandon Pickett avatar Brandon Pickettorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnna Syme avatar Anna Symeorcid logoNate Coraor avatar Nate Coraororcid logoSimon Gladman avatar Simon GladmanWilliam Durand avatar William DurandNatalie Whitaker-Allen avatar Natalie Whitaker-AllenMarius van den Beek avatar Marius van den BeekEnis Afgan avatar Enis Afganorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena RascheBazante Sanders avatar Bazante SandersAnton Nekrutenko avatar Anton NekrutenkoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoTeresa Müller avatar Teresa Müllerorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoVini Salazar avatar Vini Salazarorcid logoMaria Doyle avatar Maria Doyleorcid logoLinelle Abueg avatar Linelle Abuegorcid logoAlex Ostrovsky avatar Alex OstrovskyMatúš Kalaš avatar Matúš Kalašorcid logoPolina Polunina avatar Polina Poluninaorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoGiuseppe Defazio avatar Giuseppe DefazioFabian Recktenwald avatar Fabian Recktenwaldorcid logoMiaomiao Zhou avatar Miaomiao ZhouMarcella Sozzoni avatar Marcella SozzoniGiulio Formenti avatar Giulio Formentiorcid logoErwan Corre avatar Erwan Correorcid logoTom Brown avatar Tom Brownorcid logoPaul Zierep avatar Paul Ziereporcid logoCristóbal Gallardo avatar Cristóbal GallardoNiall Beard avatar Niall BeardVerena Moosmann avatar Verena Moosmannorcid logoBérénice Batut avatar Bérénice Batutorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSolenne Correard avatar Solenne CorreardGrace Hall avatar Grace HallWillem de Koning avatar Willem de Koning

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ABRomics
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Avans
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Australian BioCommons
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Melbourne Bioinformatics
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ELIXIR Europe
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IFB
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The University of Melbourne