assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoNicola Soranzo avatar Nicola SoranzoGrace Hall avatar Grace Hallorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoTristan Reynolds avatar Tristan ReynoldsMarcella Sozzoni avatar Marcella Sozzoniorcid logoBérénice Batut avatar Bérénice Batutorcid logoPolina Polunina avatar Polina Poluninaorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnna Syme avatar Anna SymeGiulio Formenti avatar Giulio Formentiorcid logoAlex Ostrovsky avatar Alex OstrovskyBazante Sanders avatar Bazante Sandersorcid logoVini Salazar avatar Vini Salazarorcid logoLaura Leroi avatar Laura Leroiorcid logoSimon Gladman avatar Simon Gladmanorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoHelena Rasche avatar Helena RascheMarius van den Beek avatar Marius van den BeekBrandon Pickett avatar Brandon Pickettorcid logoRomane LIBOUBAN avatar Romane LIBOUBANMatúš Kalaš avatar Matúš Kalašorcid logoTom Brown avatar Tom Brownorcid logoNate Coraor avatar Nate Coraororcid logoLinelle Abueg avatar Linelle Abuegorcid logoErwan Corre avatar Erwan CorreNiall Beard avatar Niall BeardEnis Afgan avatar Enis Afganorcid logoMaria Doyle avatar Maria DoyleVerena Moosmann avatar Verena MoosmannWilliam Durand avatar William Durandorcid logoAlexandre Cormier avatar Alexandre CormierGildas Le Corguillé avatar Gildas Le CorguilléWillem de Koning avatar Willem de Koningorcid logoDeepti Varshney avatar Deepti VarshneyAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDelphine Lariviere avatar Delphine LariviereNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoTeresa Müller avatar Teresa Müllerorcid logoPaul Zierep avatar Paul Ziereporcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSolenne Correard avatar Solenne Correardorcid logoCristóbal Gallardo avatar Cristóbal GallardoFabian Recktenwald avatar Fabian Recktenwald

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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Australian BioCommons
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ELIXIR Europe
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Melbourne Bioinformatics
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ABRomics
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Avans
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IFB