assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

Natalie Whitaker-Allen avatar Natalie Whitaker-AllenNiall Beard avatar Niall Beardorcid logoDeepti Varshney avatar Deepti VarshneyGiulio Formenti avatar Giulio Formentiorcid logoMaria Doyle avatar Maria DoyleVerena Moosmann avatar Verena Moosmannorcid logoAnna Syme avatar Anna SymeMatúš Kalaš avatar Matúš Kalašorcid logoLaura Leroi avatar Laura LeroiFabian Recktenwald avatar Fabian RecktenwaldBazante Sanders avatar Bazante Sandersorcid logoSolenne Correard avatar Solenne Correardorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoRomane LIBOUBAN avatar Romane LIBOUBANGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoNate Coraor avatar Nate CoraorWilliam Durand avatar William DurandWillem de Koning avatar Willem de Koningorcid logoTeresa Müller avatar Teresa Müllerorcid logoLinelle Abueg avatar Linelle AbuegAnton Nekrutenko avatar Anton Nekrutenkoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoErwan Corre avatar Erwan CorreBrandon Pickett avatar Brandon Pickettorcid logoMarius van den Beek avatar Marius van den Beekorcid logoVini Salazar avatar Vini SalazarMarcella Sozzoni avatar Marcella Sozzoniorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSimon Gladman avatar Simon Gladmanorcid logoPaul Zierep avatar Paul Ziereporcid logoTom Brown avatar Tom Brownorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoPolina Polunina avatar Polina PoluninaEnis Afgan avatar Enis Afganorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoBérénice Batut avatar Bérénice BatutGrace Hall avatar Grace Hallorcid logoWolfgang Maier avatar Wolfgang Maier

Funding

These individuals or organisations provided funding support for the development of this resource

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Avans
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Australian BioCommons
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Melbourne Bioinformatics
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The University of Melbourne
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ABRomics
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IFB
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe