assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMaria Doyle avatar Maria DoyleBazante Sanders avatar Bazante Sandersorcid logoTristan Reynolds avatar Tristan ReynoldsMarius van den Beek avatar Marius van den BeekNiall Beard avatar Niall Beardorcid logoSimon Gladman avatar Simon Gladmanorcid logoLinelle Abueg avatar Linelle AbuegGildas Le Corguillé avatar Gildas Le Corguilléorcid logoStéphanie Robin avatar Stéphanie RobinGiulio Formenti avatar Giulio Formentiorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPaul Zierep avatar Paul Ziereporcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAnna Syme avatar Anna SymeFabian Recktenwald avatar Fabian Recktenwaldorcid logoBérénice Batut avatar Bérénice Batutorcid logoSolenne Correard avatar Solenne CorreardVerena Moosmann avatar Verena Moosmannorcid logoNate Coraor avatar Nate Coraororcid logoHelena Rasche avatar Helena Rascheorcid logoWolfgang Maier avatar Wolfgang MaierNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoMiaomiao Zhou avatar Miaomiao ZhouMatúš Kalaš avatar Matúš KalašWillem de Koning avatar Willem de KoningAnton Nekrutenko avatar Anton Nekrutenkoorcid logoPolina Polunina avatar Polina PoluninaWilliam Durand avatar William Durandorcid logoVini Salazar avatar Vini SalazarEnis Afgan avatar Enis Afganorcid logoTom Brown avatar Tom Brownorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoTeresa Müller avatar Teresa MüllerMarcella Sozzoni avatar Marcella SozzoniBrandon Pickett avatar Brandon Pickettorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoErwan Corre avatar Erwan Correorcid logoLaura Leroi avatar Laura LeroiGrace Hall avatar Grace Hallorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAlex Ostrovsky avatar Alex Ostrovsky

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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IFB
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Avans
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Melbourne Bioinformatics
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The University of Melbourne
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ELIXIR Europe
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.