assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoMaria Doyle avatar Maria Doyleorcid logoAlexandre Cormier avatar Alexandre CormierGrace Hall avatar Grace Hallorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoPolina Polunina avatar Polina Poluninaorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang MaierMarcella Sozzoni avatar Marcella Sozzoniorcid logoAnna Syme avatar Anna Symeorcid logoHelena Rasche avatar Helena Rascheorcid logoNate Coraor avatar Nate Coraororcid logoBjörn Grüning avatar Björn GrüningBrandon Pickett avatar Brandon Pickettorcid logoTom Brown avatar Tom BrownAnton Nekrutenko avatar Anton Nekrutenkoorcid logoPaul Zierep avatar Paul ZierepMarius van den Beek avatar Marius van den BeekBazante Sanders avatar Bazante SandersWillem de Koning avatar Willem de KoningNiall Beard avatar Niall Beardorcid logoSolenne Correard avatar Solenne CorreardMatúš Kalaš avatar Matúš KalašNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBérénice Batut avatar Bérénice Batutorcid logoLinelle Abueg avatar Linelle Abuegorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoVini Salazar avatar Vini Salazarorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoErwan Corre avatar Erwan Correorcid logoTeresa Müller avatar Teresa MüllerFabian Recktenwald avatar Fabian RecktenwaldVerena Moosmann avatar Verena Moosmannorcid logoLaura Leroi avatar Laura Leroiorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoDelphine Lariviere avatar Delphine LariviereGiulio Formenti avatar Giulio Formentiorcid logoTristan Reynolds avatar Tristan ReynoldsGildas Le Corguillé avatar Gildas Le CorguilléEnis Afgan avatar Enis Afganorcid logoSimon Gladman avatar Simon GladmanWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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Melbourne Bioinformatics
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Australian BioCommons
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IFB
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Avans
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ELIXIR Europe
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The University of Melbourne
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.