assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDelphine Lariviere avatar Delphine LariviereBazante Sanders avatar Bazante Sandersorcid logoMiaomiao Zhou avatar Miaomiao ZhouGrace Hall avatar Grace HallEnis Afgan avatar Enis Afganorcid logoVini Salazar avatar Vini Salazarorcid logoRomane LIBOUBAN avatar Romane LIBOUBANFabian Recktenwald avatar Fabian Recktenwaldorcid logoMaria Doyle avatar Maria Doyleorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoBérénice Batut avatar Bérénice Batutorcid logoTom Brown avatar Tom Brownorcid logoAlex Ostrovsky avatar Alex OstrovskyMarcella Sozzoni avatar Marcella Sozzoniorcid logoErwan Corre avatar Erwan Correorcid logoNate Coraor avatar Nate Coraororcid logoStéphanie Robin avatar Stéphanie RobinWilliam Durand avatar William DurandVerena Moosmann avatar Verena Moosmannorcid logoDeepti Varshney avatar Deepti VarshneyNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoPaul Zierep avatar Paul ZierepAnton Nekrutenko avatar Anton NekrutenkoBrandon Pickett avatar Brandon Pickettorcid logoLinelle Abueg avatar Linelle Abuegorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoTeresa Müller avatar Teresa MüllerWillem de Koning avatar Willem de Koningorcid logoSaskia Hiltemann avatar Saskia HiltemannMatúš Kalaš avatar Matúš KalašMarius van den Beek avatar Marius van den Beekorcid logoBjörn Grüning avatar Björn GrüningGiulio Formenti avatar Giulio Formentiorcid logoPolina Polunina avatar Polina Poluninaorcid logoSolenne Correard avatar Solenne Correardorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoLaura Leroi avatar Laura Leroiorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoSimon Gladman avatar Simon Gladmanorcid logoAnna Syme avatar Anna SymeGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHelena Rasche avatar Helena RascheNiall Beard avatar Niall Beard

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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Melbourne Bioinformatics
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Avans
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IFB
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Australian BioCommons