assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoRomane LIBOUBAN avatar Romane LIBOUBANVerena Moosmann avatar Verena Moosmannorcid logoPaul Zierep avatar Paul ZierepAnton Nekrutenko avatar Anton NekrutenkoWilliam Durand avatar William Durandorcid logoTeresa Müller avatar Teresa MüllerGrace Hall avatar Grace Hallorcid logoLinelle Abueg avatar Linelle Abuegorcid logoSaskia Hiltemann avatar Saskia HiltemannMarcella Sozzoni avatar Marcella Sozzoniorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMaria Doyle avatar Maria DoyleMarius van den Beek avatar Marius van den Beekorcid logoLaura Leroi avatar Laura LeroiFabian Recktenwald avatar Fabian Recktenwaldorcid logoVini Salazar avatar Vini SalazarEnis Afgan avatar Enis Afganorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoDelphine Lariviere avatar Delphine LariviereWillem de Koning avatar Willem de KoningNatalie Whitaker-Allen avatar Natalie Whitaker-AllenBazante Sanders avatar Bazante SandersMatúš Kalaš avatar Matúš Kalašorcid logoErwan Corre avatar Erwan Correorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena RascheGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnna Syme avatar Anna Symeorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoMiaomiao Zhou avatar Miaomiao ZhouBrandon Pickett avatar Brandon PickettNiall Beard avatar Niall Beardorcid logoTom Brown avatar Tom Brownorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoSimon Gladman avatar Simon Gladmanorcid logoNate Coraor avatar Nate Coraororcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoSolenne Correard avatar Solenne CorreardGiulio Formenti avatar Giulio Formentiorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBjörn Grüning avatar Björn Grüningorcid logoPolina Polunina avatar Polina Polunina

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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IFB
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Avans
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Australian BioCommons
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ELIXIR Europe
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The University of Melbourne