assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMarcella Sozzoni avatar Marcella Sozzoniorcid logoBjörn Grüning avatar Björn GrüningBazante Sanders avatar Bazante SandersMarius van den Beek avatar Marius van den Beekorcid logoTom Brown avatar Tom BrownFabian Recktenwald avatar Fabian Recktenwaldorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoVini Salazar avatar Vini SalazarEnis Afgan avatar Enis Afganorcid logoNicola Soranzo avatar Nicola SoranzoGiulio Formenti avatar Giulio Formentiorcid logoTeresa Müller avatar Teresa MüllerWillem de Koning avatar Willem de Koningorcid logoPaul Zierep avatar Paul Ziereporcid logoRomane LIBOUBAN avatar Romane LIBOUBANNatalie Whitaker-Allen avatar Natalie Whitaker-AllenAnton Nekrutenko avatar Anton Nekrutenkoorcid logoSimon Gladman avatar Simon Gladmanorcid logoStéphanie Robin avatar Stéphanie RobinWilliam Durand avatar William Durandorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoSolenne Correard avatar Solenne Correardorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoNate Coraor avatar Nate Coraororcid logoLinelle Abueg avatar Linelle Abuegorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoErwan Corre avatar Erwan Correorcid logoAnna Syme avatar Anna SymeBrandon Pickett avatar Brandon Pickettorcid logoHelena Rasche avatar Helena RascheVerena Moosmann avatar Verena Moosmannorcid logoLaura Leroi avatar Laura LeroiNiall Beard avatar Niall BeardGrace Hall avatar Grace Hallorcid logoMaria Doyle avatar Maria Doyleorcid logoDeepti Varshney avatar Deepti VarshneyGildas Le Corguillé avatar Gildas Le Corguilléorcid logoPolina Polunina avatar Polina Poluninaorcid logoBérénice Batut avatar Bérénice Batutorcid logoDelphine Lariviere avatar Delphine LariviereMatúš Kalaš avatar Matúš Kalašorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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The University of Melbourne
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Avans
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IFB
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ABRomics
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Melbourne Bioinformatics