assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

orcid logoAlex Ostrovsky avatar Alex OstrovskyMatúš Kalaš avatar Matúš Kalašorcid logoMarius van den Beek avatar Marius van den Beekorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoPaul Zierep avatar Paul ZierepAnton Nekrutenko avatar Anton Nekrutenkoorcid logoWolfgang Maier avatar Wolfgang MaierGildas Le Corguillé avatar Gildas Le Corguilléorcid logoTom Brown avatar Tom Brownorcid logoVini Salazar avatar Vini Salazarorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBérénice Batut avatar Bérénice BatutVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria DoyleBrandon Pickett avatar Brandon Pickettorcid logoPolina Polunina avatar Polina PoluninaFabian Recktenwald avatar Fabian Recktenwaldorcid logoTristan Reynolds avatar Tristan ReynoldsGrace Hall avatar Grace Hallorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoMiaomiao Zhou avatar Miaomiao ZhouWillem de Koning avatar Willem de Koningorcid logoNicola Soranzo avatar Nicola SoranzoNatalie Whitaker-Allen avatar Natalie Whitaker-Allenorcid logoAnna Syme avatar Anna Symeorcid logoGiuseppe Defazio avatar Giuseppe Defazioorcid logoRomane LIBOUBAN avatar Romane LIBOUBANMarcella Sozzoni avatar Marcella SozzoniWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningNiall Beard avatar Niall Beardorcid logoTeresa Müller avatar Teresa Müllerorcid logoSolenne Correard avatar Solenne Correardorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoLinelle Abueg avatar Linelle Abuegorcid logoNate Coraor avatar Nate Coraororcid logoErwan Corre avatar Erwan CorreGiulio Formenti avatar Giulio Formentiorcid logoLaura Leroi avatar Laura Leroiorcid logoCristóbal Gallardo avatar Cristóbal GallardoBazante Sanders avatar Bazante Sandersorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena RascheEnis Afgan avatar Enis Afganorcid logoSimon Gladman avatar Simon Gladman

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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Avans
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Melbourne Bioinformatics
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ABRomics
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IFB
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The University of Melbourne
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ELIXIR Europe
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.