assembly

Tutorials covering assembly

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
An Introduction to Genome Assembly
An introduction to get started in genome assembly and annotation
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Assembly of the mitochondrial genome from PacBio HiFi reads
biodiversity
Chloroplast genome assembly
plants nanopore jbrowse1 biodiversity
De Bruijn Graph Assembly
Decontamination of a genome assembly
biodiversity
Deeper look into Genome Assembly algorithms
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
ERGA post-assembly QC
plants animals genome assembly QC biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly Quality Control
assembly quality control biodiversity
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
nanopore assembly amr microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
illumina assembly microgalaxy
Genome assembly and assembly QC - Introduction short version
Genome assembly using PacBio data
assembly pacbio biodiversity
Genome assembly using PacBio data
assembly pacbio biodiversity
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Hybrid genome assembly - Nanopore and Illumina
assembly nanopore illumina denovo genomics
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Large genome assembly and polishing
assembly polishing nanopore plants biodiversity
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1
Unicycler Assembly
prokaryote microgalaxy biodiversity
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
covid19 biodiversity
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
pacbio eukaryote VGP biodiversity
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
pacbio eukaryote VGP biodiversity

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Antibiotic resistance detection
nanopore plasmids assembly amr microgalaxy
Assembly of metagenomic sequencing data
assembly metagenomics microgalaxy
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
assembly binning metagenomics microgalaxy

Contributors

This material was contributed to by:

Verena Moosmann avatar Verena Moosmannorcid logoSaskia Hiltemann avatar Saskia HiltemannWillem de Koning avatar Willem de Koningorcid logoNate Coraor avatar Nate Coraororcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoTristan Reynolds avatar Tristan ReynoldsGiulio Formenti avatar Giulio Formentiorcid logoPolina Polunina avatar Polina Poluninaorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoSolenne Correard avatar Solenne CorreardWilliam Durand avatar William Durandorcid logoGiuseppe Defazio avatar Giuseppe DefazioGrace Hall avatar Grace Hallorcid logoPaul Zierep avatar Paul ZierepMarius van den Beek avatar Marius van den Beekorcid logoVini Salazar avatar Vini Salazarorcid logoLaura Leroi avatar Laura Leroiorcid logoErwan Corre avatar Erwan Correorcid logoTom Brown avatar Tom Brownorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMaria Doyle avatar Maria Doyleorcid logoHelena Rasche avatar Helena RascheNatalie Whitaker-Allen avatar Natalie Whitaker-AllenBrandon Pickett avatar Brandon PickettEnis Afgan avatar Enis Afganorcid logoAnna Syme avatar Anna Symeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlexandre Cormier avatar Alexandre CormierNiall Beard avatar Niall Beardorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn GrüningMatúš Kalaš avatar Matúš KalašAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoTeresa Müller avatar Teresa Müllerorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoStéphanie Robin avatar Stéphanie RobinBazante Sanders avatar Bazante SandersMarcella Sozzoni avatar Marcella SozzoniFabian Recktenwald avatar Fabian Recktenwaldorcid logoLinelle Abueg avatar Linelle Abuegorcid logoBérénice Batut avatar Bérénice BatutGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSimon Gladman avatar Simon Gladman

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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ELIXIR Europe
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The University of Melbourne
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IFB
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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Avans
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ABRomics