These workflows are associated with De Bruijn Graph Assembly

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Debruijn Graph

Last updated Jul 25, 2020

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Tests: ✅ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\nmutant_R1"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nmutant_R2"];
  style 1 stroke:#2c3143,stroke-width:4px;
  0 -->|output| 2;
  1 -->|output| 2;
  0 -->|output| 3;
  1 -->|output| 3;
  4["Fasta Statistics"];
  2 -->|contigs| 4;
  4 --> dacb84a5-5482-4ab0-81ad-e92af21636cd;
  style dacb84a5-5482-4ab0-81ad-e92af21636cd stroke:#2c3143,stroke-width:4px;
  5["Fasta Statistics"];
  3 -->|out_contigs| 5;
  5 --> ff376be9-7361-48c6-b1c8-d9f951b9c6fa;
  style ff376be9-7361-48c6-b1c8-d9f951b9c6fa stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: