statistics

Tutorials covering statistics

Material

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Statistics and machine learning

Lesson Slides Hands-on Recordings Input dataset Workflows
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
interactive-tools machine-learning deep-learning jupyter-lab image-segmentation protein-3D-structure
Age prediction using machine learning
Basics of machine learning
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Foundational Aspects of Machine Learning using Python
elixir ai-ml jupyter-notebook
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
HAM10000 Dataset Image Classification Deep Learning Image Learner Skin Lesion Classification
Galaxy Tabular Learner - Building a Model using Chowell clinical data
LORIS Score Model Machine Learning Tabular Learner
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
Multimodal Learning GLEAM HANCOCK Dataset Recurrence Prediction
Identifing Survival Markers of Brain tumor with Flexynesis
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
interactive-tools
Introduction to deep learning
Machine learning: classification and regression
Modeling Breast Cancer Subtypes with Flexynesis
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Machine learning Pan-cancer cancer biomarkers oncogenes and tumor suppressor genes
Prepare Data from CbioPortal for Flexynesis Integration
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-mining with the SimText toolset
interactive-tools
Train and Test a Deep learning image classifier with Galaxy-Ludwig
MNIST Deep learning Ludwig
Unsupervised Analysis of Bone Marrow Cells with Flexynesis
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Regulations/standards for AI using DOME
elixir ai-ml

Contributors

This material was contributed to by:

Marzia A Cremona avatar Marzia A CremonaVijay avatar VijayRaphael Mourad avatar Raphael Mouradorcid logoMartin Čech avatar Martin Čechorcid logoAlyssa Pybus avatar Alyssa Pybusorcid logoFabio Cumbo avatar Fabio Cumboorcid logoTeresa Müller avatar Teresa Müllerorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoStella Fragkouli avatar Stella Fragkouliorcid logoJeremy Goecks avatar Jeremy Goecksorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPolina Polunina avatar Polina Poluninaorcid logoAnup Kumar avatar Anup Kumarorcid logoMichelle Terese Savage avatar Michelle Terese SavageDennis Lal group avatar Dennis Lal grouporcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoNate Coraor avatar Nate CoraorWandrille Duchemin avatar Wandrille DucheminSimon Bray avatar Simon BrayMélanie Petera avatar Mélanie Peteraorcid logoMarie Gramm avatar Marie Grammorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAlireza Khanteymoori avatar Alireza Khanteymooriorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoBjörn Grüning avatar Björn Grüningorcid logoJunhao Qiu avatar Junhao QiuRalf Gabriels avatar Ralf GabrielsKaivan Kamali avatar Kaivan Kamaliorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice BatutKhai Van Dang avatar Khai Van DangGildas Le Corguillé avatar Gildas Le Corguilléorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra JuniorEkaterina Polkh avatar Ekaterina Polkh

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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de.NBI
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ELIXIR Europe
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.