statistics

Tutorials covering statistics

Material

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Statistics and machine learning

Lesson Slides Hands-on Recordings Input dataset Workflows
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Regulations/standards for AI using DOME
elixir ai-ml
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
interactive-tools machine-learning deep-learning jupyter-lab image-segmentation protein-3D-structure
Age prediction using machine learning
Basics of machine learning
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Foundational Aspects of Machine Learning using Python
elixir ai-ml jupyter-notebook
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
HAM10000 Dataset Image Classification Deep Learning Image Learner Skin Lesion Classification
GTEx Tissue Modeling with Galaxy Image Learner
GTEx Tissue Classification Gene Expression Image Learner Deep Learning
Galaxy Tabular Learner - Building a Model using Chowell clinical data
LORIS Score Model Machine Learning Tabular Learner
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
Multimodal Learning GLEAM HANCOCK Dataset Recurrence Prediction
Identifing Survival Markers of Brain tumor with Flexynesis
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
interactive-tools
Introduction to deep learning
Machine learning: classification and regression
Modeling Breast Cancer Subtypes with Flexynesis
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Machine learning Pan-cancer cancer biomarkers oncogenes and tumor suppressor genes
Prepare Data from CbioPortal for Flexynesis Integration
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-mining with the SimText toolset
interactive-tools
Train and Test a Deep learning image classifier with Galaxy-Ludwig
MNIST Deep learning Ludwig
Unsupervised Analysis of Bone Marrow Cells with Flexynesis

Contributors

This material was contributed to by:

orcid logoPolina Polunina avatar Polina Poluninaorcid logoJunhao Qiu avatar Junhao QiuMarzia A Cremona avatar Marzia A Cremonaorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiRalf Gabriels avatar Ralf GabrielsMélanie Petera avatar Mélanie Peteraorcid logoBérénice Batut avatar Bérénice BatutGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHelena Rasche avatar Helena Rascheorcid logoJeremy Goecks avatar Jeremy Goecksorcid logoAlyssa Pybus avatar Alyssa Pybusorcid logoMartin Čech avatar Martin Čechorcid logoAlireza Khanteymoori avatar Alireza Khanteymooriorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoFabio Cumbo avatar Fabio CumboAllissa Dillman avatar Allissa Dillmanorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosVijay avatar Vijayorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra JuniorRaphael Mourad avatar Raphael MouradDennis Lal group avatar Dennis Lal grouporcid logoAnthony Bretaudeau avatar Anthony BretaudeauKaivan Kamali avatar Kaivan KamaliWandrille Duchemin avatar Wandrille Ducheminorcid logoArmin Dadras avatar Armin Dadrasorcid logoMarie Gramm avatar Marie Grammorcid logoMichelle Terese Savage avatar Michelle Terese SavageSimon Bray avatar Simon Brayorcid logoAnup Kumar avatar Anup Kumarorcid logoNate Coraor avatar Nate CoraorEkaterina Polkh avatar Ekaterina PolkhNatalie Kucher avatar Natalie KucherKhai Van Dang avatar Khai Van Dangorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoTeresa Müller avatar Teresa Müllerorcid logoBjörn Grüning avatar Björn Grüningorcid logoStella Fragkouli avatar Stella Fragkouli

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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UFR
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de.NBI
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.