statistics

Tutorials covering statistics

Material

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Statistics and machine learning

Lesson Slides Hands-on Recordings Input dataset Workflows
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Regulations/standards for AI using DOME
elixir ai-ml
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
interactive-tools machine-learning deep-learning jupyter-lab image-segmentation protein-3D-structure
Age prediction using machine learning
Basics of machine learning
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Foundational Aspects of Machine Learning using Python
elixir ai-ml jupyter-notebook
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
HAM10000 Dataset Image Classification Deep Learning Image Learner Skin Lesion Classification
GTEx Tissue Modeling with Galaxy Image Learner
GTEx Tissue Classification Gene Expression Image Learner Deep Learning
Galaxy Tabular Learner - Building a Model using Chowell clinical data
LORIS Score Model Machine Learning Tabular Learner
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
Multimodal Learning GLEAM HANCOCK Dataset Recurrence Prediction
Identifing Survival Markers of Brain tumor with Flexynesis
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
interactive-tools
Introduction to deep learning
Machine learning: classification and regression
Modeling Breast Cancer Subtypes with Flexynesis
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Machine learning Pan-cancer cancer biomarkers oncogenes and tumor suppressor genes
Prepare Data from CbioPortal for Flexynesis Integration
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-mining with the SimText toolset
interactive-tools
Train and Test a Deep learning image classifier with Galaxy-Ludwig
MNIST Deep learning Ludwig
Unsupervised Analysis of Bone Marrow Cells with Flexynesis

Contributors

This material was contributed to by:

orcid logoStella Fragkouli avatar Stella Fragkouliorcid logoNate Coraor avatar Nate Coraororcid logoTeresa Müller avatar Teresa Müllerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDaniel Blankenberg avatar Daniel BlankenbergRalf Gabriels avatar Ralf Gabrielsorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoJunhao Qiu avatar Junhao Qiuorcid logoHelena Rasche avatar Helena Rascheorcid logoJeremy Goecks avatar Jeremy Goecksorcid logoSaskia Hiltemann avatar Saskia HiltemannKhai Van Dang avatar Khai Van DangDennis Lal group avatar Dennis Lal groupWandrille Duchemin avatar Wandrille Ducheminorcid logoFabio Cumbo avatar Fabio CumboSimon Bray avatar Simon Brayorcid logoAlyssa Pybus avatar Alyssa Pybusorcid logoArmin Dadras avatar Armin Dadrasorcid logoBjörn Grüning avatar Björn Grüningorcid logoPolina Polunina avatar Polina Poluninaorcid logoAnup Kumar avatar Anup Kumarorcid logoBérénice Batut avatar Bérénice Batutorcid logoMichelle Terese Savage avatar Michelle Terese SavageAllissa Dillman avatar Allissa DillmanMélanie Petera avatar Mélanie Peteraorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra JuniorEkaterina Polkh avatar Ekaterina PolkhRaphael Mourad avatar Raphael Mouradorcid logoMarie Gramm avatar Marie GrammKaivan Kamali avatar Kaivan Kamaliorcid logoAlireza Khanteymoori avatar Alireza KhanteymooriNatalie Kucher avatar Natalie Kucherorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiGildas Le Corguillé avatar Gildas Le CorguilléVijay avatar Vijayorcid logoMartin Čech avatar Martin ČechMarzia A Cremona avatar Marzia A Cremona

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.NBI
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.