statistics

Tutorials covering statistics

Material

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Statistics and machine learning

Lesson Slides Hands-on Recordings Input dataset Workflows
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook
Regulations/standards for AI using DOME
elixir ai-ml
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
interactive-tools machine-learning deep-learning jupyter-lab image-segmentation protein-3D-structure
Age prediction using machine learning
Basics of machine learning
Classification in Machine Learning
Clustering in Machine Learning
Deep Learning (Part 1) - Feedforward neural networks (FNN)
Deep Learning (Part 2) - Recurrent neural networks (RNN)
Deep Learning (Part 3) - Convolutional neural networks (CNN)
Fine tune large protein model (ProtTrans) using HuggingFace
interactive-tools machine-learning deep-learning jupyter-lab fine-tuning dephosphorylation-site-prediction
Foundational Aspects of Machine Learning using Python
elixir ai-ml jupyter-notebook
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
HAM10000 Dataset Image Classification Deep Learning Image Learner Skin Lesion Classification
GTEx Tissue Modeling with Galaxy Image Learner
GTEx Tissue Classification Gene Expression Image Learner Deep Learning
Galaxy Tabular Learner - Building a Model using Chowell clinical data
LORIS Score Model Machine Learning Tabular Learner
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
Multimodal Learning GLEAM HANCOCK Dataset Recurrence Prediction
Identifing Survival Markers of Brain tumor with Flexynesis
Image classification in Galaxy with fruit 360 dataset
Interval-Wise Testing for omics data
Introduction to Machine Learning using R
interactive-tools
Introduction to deep learning
Machine learning: classification and regression
Modeling Breast Cancer Subtypes with Flexynesis
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
Machine learning Pan-cancer cancer biomarkers oncogenes and tumor suppressor genes
Prepare Data from CbioPortal for Flexynesis Integration
Regression in Machine Learning
Supervised Learning with Hyperdimensional Computing
Text-mining with the SimText toolset
interactive-tools
Train and Test a Deep learning image classifier with Galaxy-Ludwig
MNIST Deep learning Ludwig
Unsupervised Analysis of Bone Marrow Cells with Flexynesis

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice BatutMélanie Petera avatar Mélanie Peteraorcid logoAnthony Bretaudeau avatar Anthony BretaudeauKaivan Kamali avatar Kaivan Kamaliorcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosWandrille Duchemin avatar Wandrille Ducheminorcid logoPolina Polunina avatar Polina PoluninaKhai Van Dang avatar Khai Van Dangorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlyssa Pybus avatar Alyssa PybusAllissa Dillman avatar Allissa DillmanDennis Lal group avatar Dennis Lal grouporcid logoNate Coraor avatar Nate CoraorSimon Bray avatar Simon Brayorcid logoMichelle Terese Savage avatar Michelle Terese Savageorcid logoPaulo Cilas Morais Lyra Junior avatar Paulo Cilas Morais Lyra Juniororcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoArmin Dadras avatar Armin Dadrasorcid logoFabio Cumbo avatar Fabio Cumboorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn GrüningNatalie Kucher avatar Natalie Kucherorcid logoJeremy Goecks avatar Jeremy GoecksRalf Gabriels avatar Ralf Gabrielsorcid logoAlireza Khanteymoori avatar Alireza Khanteymooriorcid logoTeresa Müller avatar Teresa MüllerRaphael Mourad avatar Raphael Mouradorcid logoDaniel Blankenberg avatar Daniel BlankenbergGildas Le Corguillé avatar Gildas Le CorguilléEkaterina Polkh avatar Ekaterina Polkhorcid logoJunhao Qiu avatar Junhao QiuMarzia A Cremona avatar Marzia A Cremonaorcid logoMartin Čech avatar Martin Čechorcid logoStella Fragkouli avatar Stella FragkouliVijay avatar Vijayorcid logoMarie Gramm avatar Marie Grammorcid logoAnup Kumar avatar Anup Kumar

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.