epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoTimon Schlegel avatar Timon SchlegelDevon Ryan avatar Devon RyanVerena Moosmann avatar Verena Moosmannorcid logoBérénice Batut avatar Bérénice Batutorcid logoYvan Le Bras avatar Yvan Le BrasMehmet Tekman avatar Mehmet TekmanTorsten Houwaart avatar Torsten HouwaartVivek Bhardwaj avatar Vivek BhardwajGildas Le Corguillé avatar Gildas Le CorguilléEkaterina Polkh avatar Ekaterina PolkhWilliam Durand avatar William DurandNiall Beard avatar Niall Beardorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi Baconorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMartin Čech avatar Martin ČechFriederike Dündar avatar Friederike DündarFidel Ramirez avatar Fidel Ramirezorcid logoMallory Freeberg avatar Mallory Freebergorcid logoBjörn Grüning avatar Björn Grüningorcid logoFlorian Heyl avatar Florian Heylorcid logoAnup Kumar avatar Anup Kumarorcid logoArmin Dadras avatar Armin Dadrasorcid logoLucille Delisle avatar Lucille Delisleorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoKhaled Jum'ah avatar Khaled Jum'ahLeily Rabbani avatar Leily Rabbaniorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMaria Doyle avatar Maria Doyleorcid logoSaskia Hiltemann avatar Saskia HiltemannMélanie Petera avatar Mélanie Peteraorcid logoMarisa Loach avatar Marisa Loachorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMo Heydarian avatar Mo HeydarianJoachim Wolff avatar Joachim Wolff

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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de.KCD
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Collaborative Research Centre 992
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de.NBI
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Melbourne Bioinformatics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR Europe
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The University of Melbourne
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Australian BioCommons