epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoLucille Delisle avatar Lucille Delisleorcid logoArmin Dadras avatar Armin Dadrasorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoMarisa Loach avatar Marisa Loachorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaDevon Ryan avatar Devon Ryanorcid logoMallory Freeberg avatar Mallory Freebergorcid logoFlorian Heyl avatar Florian HeylMehmet Tekman avatar Mehmet TekmanFriederike Dündar avatar Friederike Dündarorcid logoHelena Rasche avatar Helena Rascheorcid logoTimon Schlegel avatar Timon Schlegelorcid logoBérénice Batut avatar Bérénice Batutorcid logoWendi Bacon avatar Wendi BaconJoachim Wolff avatar Joachim WolffNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin Čechorcid logoBjörn Grüning avatar Björn Grüningorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzTorsten Houwaart avatar Torsten Houwaartorcid logoMo Heydarian avatar Mo Heydarianorcid logoPavankumar Videm avatar Pavankumar VidemLeily Rabbani avatar Leily Rabbaniorcid logoWolfgang Maier avatar Wolfgang MaierEkaterina Polkh avatar Ekaterina PolkhMélanie Petera avatar Mélanie Peteraorcid logoYvan Le Bras avatar Yvan Le BrasFidel Ramirez avatar Fidel Ramirezorcid logoAnup Kumar avatar Anup Kumarorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoSaskia Hiltemann avatar Saskia HiltemannVerena Moosmann avatar Verena MoosmannVivek Bhardwaj avatar Vivek BhardwajWilliam Durand avatar William DurandGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMaria Doyle avatar Maria Doyleorcid logoTristan Reynolds avatar Tristan Reynolds

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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de.KCD
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The University of Melbourne
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Australian BioCommons
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ELIXIR Europe
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Collaborative Research Centre 992
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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UFR