epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn GrüningVivek Bhardwaj avatar Vivek Bhardwajorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzGildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoBérénice Batut avatar Bérénice Batutorcid logoKhaled Jum'ah avatar Khaled Jum'ahMehmet Tekman avatar Mehmet Tekmanorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoTimon Schlegel avatar Timon Schlegelorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaVerena Moosmann avatar Verena MoosmannDevon Ryan avatar Devon RyanFidel Ramirez avatar Fidel Ramirezorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoLucille Delisle avatar Lucille DelisleTorsten Houwaart avatar Torsten HouwaartFriederike Dündar avatar Friederike Dündarorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoWendi Bacon avatar Wendi Baconorcid logoFlorian Heyl avatar Florian HeylLeily Rabbani avatar Leily Rabbaniorcid logoYvan Le Bras avatar Yvan Le BrasJoachim Wolff avatar Joachim Wolfforcid logoMo Heydarian avatar Mo Heydarianorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMarisa Loach avatar Marisa Loachorcid logoMartin Čech avatar Martin Čechorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMaria Doyle avatar Maria DoyleEkaterina Polkh avatar Ekaterina PolkhNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin Dadrasorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnup Kumar avatar Anup KumarWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.KCD
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Australian BioCommons
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The University of Melbourne
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UFR
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de.NBI
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Collaborative Research Centre 992
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Melbourne Bioinformatics