epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoSaskia Hiltemann avatar Saskia HiltemannVerena Moosmann avatar Verena Moosmannorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMo Heydarian avatar Mo Heydarianorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoWendi Bacon avatar Wendi BaconFidel Ramirez avatar Fidel RamirezEkaterina Polkh avatar Ekaterina Polkhorcid logoPavankumar Videm avatar Pavankumar VidemTorsten Houwaart avatar Torsten HouwaartFriederike Dündar avatar Friederike DündarLeily Rabbani avatar Leily RabbaniJoachim Wolff avatar Joachim Wolfforcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaMehmet Tekman avatar Mehmet Tekmanorcid logoLucille Delisle avatar Lucille Delisleorcid logoBjörn Grüning avatar Björn Grüningorcid logoFlorian Heyl avatar Florian Heylorcid logoMarisa Loach avatar Marisa LoachNiall Beard avatar Niall BeardDevon Ryan avatar Devon Ryanorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMallory Freeberg avatar Mallory Freebergorcid logoArmin Dadras avatar Armin Dadrasorcid logoAnup Kumar avatar Anup KumarVivek Bhardwaj avatar Vivek BhardwajWilliam Durand avatar William Durandorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoTimon Schlegel avatar Timon Schlegelorcid logoBérénice Batut avatar Bérénice Batutorcid logoMartin Čech avatar Martin Čechorcid logoHelena Rasche avatar Helena Rascheorcid logoMaria Doyle avatar Maria DoyleMélanie Petera avatar Mélanie Peteraorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTristan Reynolds avatar Tristan Reynolds

Funding

These individuals or organisations provided funding support for the development of this resource

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Collaborative Research Centre 992
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR Europe
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de.NBI
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Melbourne Bioinformatics
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Australian BioCommons
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de.KCD
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The University of Melbourne
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UFR