epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoFlorian Heyl avatar Florian HeylJoachim Wolff avatar Joachim WolffLeily Rabbani avatar Leily RabbaniFidel Ramirez avatar Fidel RamirezMélanie Petera avatar Mélanie Peteraorcid logoMo Heydarian avatar Mo HeydarianEkaterina Polkh avatar Ekaterina Polkhorcid logoCristóbal Gallardo avatar Cristóbal GallardoVerena Moosmann avatar Verena Moosmannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzDevon Ryan avatar Devon Ryanorcid logoBjörn Grüning avatar Björn GrüningGildas Le Corguillé avatar Gildas Le Corguilléorcid logoWendi Bacon avatar Wendi Baconorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoTimon Schlegel avatar Timon Schlegelorcid logoMarisa Loach avatar Marisa Loachorcid logoLucille Delisle avatar Lucille DelisleVivek Bhardwaj avatar Vivek Bhardwajorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMartin Čech avatar Martin Čechorcid logoBérénice Batut avatar Bérénice BatutMehmet Tekman avatar Mehmet TekmanTorsten Houwaart avatar Torsten HouwaartNiall Beard avatar Niall Beardorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMallory Freeberg avatar Mallory Freebergorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoHelena Rasche avatar Helena Rascheorcid logoAnup Kumar avatar Anup Kumarorcid logoYvan Le Bras avatar Yvan Le BrasWilliam Durand avatar William Durandorcid logoMaria Doyle avatar Maria DoyleFriederike Dündar avatar Friederike Dündar

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Collaborative Research Centre 992
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ELIXIR Europe
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de.NBI
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de.KCD
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The University of Melbourne
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Australian BioCommons
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Melbourne Bioinformatics
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UFR