epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoTimon Schlegel avatar Timon SchlegelGildas Le Corguillé avatar Gildas Le Corguilléorcid logoCristóbal Gallardo avatar Cristóbal GallardoLeily Rabbani avatar Leily Rabbaniorcid logoMartin Čech avatar Martin Čechorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBérénice Batut avatar Bérénice BatutWilliam Durand avatar William Durandorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoWendi Bacon avatar Wendi BaconVivek Bhardwaj avatar Vivek Bhardwajorcid logoMaria Doyle avatar Maria Doyleorcid logoAnika Erxleben avatar Anika ErxlebenFidel Ramirez avatar Fidel Ramirezorcid logoHelena Rasche avatar Helena Rascheorcid logoAnup Kumar avatar Anup Kumarorcid logoMo Heydarian avatar Mo HeydarianVerena Moosmann avatar Verena Moosmannorcid logoBjörn Grüning avatar Björn Grüningorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzFriederike Dündar avatar Friederike Dündarorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoNicola Soranzo avatar Nicola SoranzoNiall Beard avatar Niall Beardorcid logoMarisa Loach avatar Marisa LoachTorsten Houwaart avatar Torsten Houwaartorcid logoMallory Freeberg avatar Mallory FreebergDevon Ryan avatar Devon RyanMélanie Petera avatar Mélanie PeteraJoachim Wolff avatar Joachim WolffEkaterina Polkh avatar Ekaterina Polkhorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoFlorian Heyl avatar Florian Heylorcid logoLucille Delisle avatar Lucille Delisleorcid logoArmin Dadras avatar Armin Dadrasorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoMehmet Tekman avatar Mehmet Tekman

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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Australian BioCommons
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Melbourne Bioinformatics
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Collaborative Research Centre 992
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de.NBI
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de.KCD
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The University of Melbourne
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR Europe