epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

Ekaterina Polkh avatar Ekaterina Polkhorcid logoWendi Bacon avatar Wendi Baconorcid logoArmin Dadras avatar Armin Dadrasorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoAnup Kumar avatar Anup KumarJoachim Wolff avatar Joachim Wolfforcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaWilliam Durand avatar William Durandorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoNicola Soranzo avatar Nicola SoranzoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMallory Freeberg avatar Mallory Freebergorcid logoHelena Rasche avatar Helena Rascheorcid logoMarisa Loach avatar Marisa LoachMélanie Petera avatar Mélanie PeteraLeily Rabbani avatar Leily RabbaniFriederike Dündar avatar Friederike Dündarorcid logoMartin Čech avatar Martin ČechVivek Bhardwaj avatar Vivek Bhardwajorcid logoBérénice Batut avatar Bérénice Batutorcid logoMo Heydarian avatar Mo Heydarianorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTimon Schlegel avatar Timon Schlegelorcid logoFlorian Heyl avatar Florian Heylorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoMaria Doyle avatar Maria DoyleDevon Ryan avatar Devon Ryanorcid logoBjörn Grüning avatar Björn Grüningorcid logoTristan Reynolds avatar Tristan ReynoldsTorsten Houwaart avatar Torsten Houwaartorcid logoLucille Delisle avatar Lucille Delisleorcid logoSaskia Hiltemann avatar Saskia HiltemannNiall Beard avatar Niall BeardMehmet Tekman avatar Mehmet Tekmanorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczFidel Ramirez avatar Fidel RamirezVerena Moosmann avatar Verena Moosmannorcid logoWolfgang Maier avatar Wolfgang Maier

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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Melbourne Bioinformatics
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Australian BioCommons
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.KCD
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UFR
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The University of Melbourne
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Collaborative Research Centre 992