epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal GallardoVerena Moosmann avatar Verena Moosmannorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoMarisa Loach avatar Marisa Loachorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoMallory Freeberg avatar Mallory FreebergFriederike Dündar avatar Friederike Dündarorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMartin Čech avatar Martin Čechorcid logoHelena Rasche avatar Helena Rascheorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoWendi Bacon avatar Wendi Baconorcid logoAnup Kumar avatar Anup KumarFidel Ramirez avatar Fidel RamirezVivek Bhardwaj avatar Vivek BhardwajWilliam Durand avatar William DurandLeily Rabbani avatar Leily Rabbaniorcid logoBjörn Grüning avatar Björn GrüningDevon Ryan avatar Devon RyanTorsten Houwaart avatar Torsten Houwaartorcid logoWolfgang Maier avatar Wolfgang MaierNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola SoranzoJoachim Wolff avatar Joachim WolffGildas Le Corguillé avatar Gildas Le Corguilléorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoFlorian Heyl avatar Florian Heylorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMo Heydarian avatar Mo Heydarianorcid logoLucille Delisle avatar Lucille Delisleorcid logoArmin Dadras avatar Armin Dadrasorcid logoTimon Schlegel avatar Timon Schlegelorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaria Doyle avatar Maria Doyleorcid logoKhaled Jum'ah avatar Khaled Jum'ahMehmet Tekman avatar Mehmet TekmanMélanie Petera avatar Mélanie PeteraEkaterina Polkh avatar Ekaterina Polkh

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.NBI
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de.KCD
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Australian BioCommons
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UFR
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The University of Melbourne
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Collaborative Research Centre 992
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Melbourne Bioinformatics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.