epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoPavankumar Videm avatar Pavankumar Videmorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoMo Heydarian avatar Mo Heydarianorcid logoArmin Dadras avatar Armin DadrasTorsten Houwaart avatar Torsten HouwaartVivek Bhardwaj avatar Vivek BhardwajVerena Moosmann avatar Verena Moosmannorcid logoFlorian Heyl avatar Florian Heylorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoYvan Le Bras avatar Yvan Le BrasMélanie Petera avatar Mélanie Peteraorcid logoTimon Schlegel avatar Timon Schlegelorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoLucille Delisle avatar Lucille DelisleLeily Rabbani avatar Leily RabbaniFriederike Dündar avatar Friederike DündarJoachim Wolff avatar Joachim Wolfforcid logoBjörn Grüning avatar Björn Grüningorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMaria Doyle avatar Maria Doyleorcid logoAnup Kumar avatar Anup Kumarorcid logoMartin Čech avatar Martin Čechorcid logoMarisa Loach avatar Marisa Loachorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoWendi Bacon avatar Wendi Baconorcid logoWolfgang Maier avatar Wolfgang MaierWilliam Durand avatar William DurandDevon Ryan avatar Devon RyanMehmet Tekman avatar Mehmet Tekmanorcid logoMallory Freeberg avatar Mallory Freebergorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzFidel Ramirez avatar Fidel RamirezEkaterina Polkh avatar Ekaterina PolkhNiall Beard avatar Niall Beardorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaGildas Le Corguillé avatar Gildas Le Corguillé

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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de.NBI
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UFR
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de.KCD
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne
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Australian BioCommons
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Collaborative Research Centre 992