epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoMallory Freeberg avatar Mallory Freebergorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoBjörn Grüning avatar Björn GrüningFriederike Dündar avatar Friederike DündarVivek Bhardwaj avatar Vivek Bhardwajorcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola SoranzoNiall Beard avatar Niall Beardorcid logoLucille Delisle avatar Lucille Delisleorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoArmin Dadras avatar Armin Dadrasorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria Doyleorcid logoTristan Reynolds avatar Tristan ReynoldsGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnup Kumar avatar Anup Kumarorcid logoTimon Schlegel avatar Timon Schlegelorcid logoYvan Le Bras avatar Yvan Le BrasMélanie Petera avatar Mélanie PeteraTorsten Houwaart avatar Torsten Houwaartorcid logoFlorian Heyl avatar Florian HeylWilliam Durand avatar William DurandMehmet Tekman avatar Mehmet Tekmanorcid logoMartin Čech avatar Martin ČechDevon Ryan avatar Devon Ryanorcid logoWolfgang Maier avatar Wolfgang MaierFidel Ramirez avatar Fidel Ramirezorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena RascheJoachim Wolff avatar Joachim WolffLeily Rabbani avatar Leily Rabbaniorcid logoMo Heydarian avatar Mo Heydarianorcid logoMarisa Loach avatar Marisa Loachorcid logoWendi Bacon avatar Wendi Baconorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoEkaterina Polkh avatar Ekaterina Polkh

Funding

These individuals or organisations provided funding support for the development of this resource

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Collaborative Research Centre 992
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de.NBI
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Melbourne Bioinformatics
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Australian BioCommons
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de.KCD
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne
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UFR
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ELIXIR Europe