epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoWendi Bacon avatar Wendi BaconFriederike Dündar avatar Friederike Dündarorcid logoAnup Kumar avatar Anup Kumarorcid logoTristan Reynolds avatar Tristan ReynoldsDevon Ryan avatar Devon Ryanorcid logoAnika Erxleben avatar Anika ErxlebenEkaterina Polkh avatar Ekaterina PolkhLeily Rabbani avatar Leily RabbaniTorsten Houwaart avatar Torsten HouwaartJoachim Wolff avatar Joachim WolffGildas Le Corguillé avatar Gildas Le Corguilléorcid logoTimon Schlegel avatar Timon Schlegelorcid logoFlorian Heyl avatar Florian Heylorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoMo Heydarian avatar Mo Heydarianorcid logoPavankumar Videm avatar Pavankumar VidemFidel Ramirez avatar Fidel RamirezNiall Beard avatar Niall Beardorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoArmin Dadras avatar Armin Dadrasorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoWilliam Durand avatar William Durandorcid logoLucille Delisle avatar Lucille DelisleMehmet Tekman avatar Mehmet Tekmanorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice Batutorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMarisa Loach avatar Marisa Loachorcid logoMaria Doyle avatar Maria Doyleorcid logoSaskia Hiltemann avatar Saskia HiltemannVerena Moosmann avatar Verena Moosmannorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzMélanie Petera avatar Mélanie Peteraorcid logoHelena Rasche avatar Helena RascheVivek Bhardwaj avatar Vivek Bhardwajorcid logoMartin Čech avatar Martin Čech

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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UFR
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de.KCD
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The University of Melbourne
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ELIXIR Europe
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de.NBI
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Collaborative Research Centre 992
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Australian BioCommons