epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq epigenetics
Formation of the Super-Structures on the Inactive X
ChIP-seq epigenetics
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi BaconVivek Bhardwaj avatar Vivek Bhardwajorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoMehmet Tekman avatar Mehmet Tekmanorcid logoFlorian Heyl avatar Florian Heylorcid logoAnup Kumar avatar Anup Kumarorcid logoMo Heydarian avatar Mo Heydarianorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczFidel Ramirez avatar Fidel Ramirezorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMaria Doyle avatar Maria Doyleorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang MaierMélanie Pétéra avatar Mélanie Pétéraorcid logoYvan Le Bras avatar Yvan Le BrasEkaterina Polkh avatar Ekaterina Polkhorcid logoLucille Delisle avatar Lucille Delisleorcid logoMartin Čech avatar Martin ČechJoachim Wolff avatar Joachim WolffTorsten Houwaart avatar Torsten Houwaartorcid logoMallory Freeberg avatar Mallory Freebergorcid logoKhaled Jum'ah avatar Khaled Jum'ahFriederike Dündar avatar Friederike DündarNiall Beard avatar Niall Beardorcid logoTimon Schlegel avatar Timon Schlegelorcid logoPavankumar Videm avatar Pavankumar VidemDevon Ryan avatar Devon RyanGildas Le Corguillé avatar Gildas Le Corguilléorcid logoArmin Dadras avatar Armin Dadrasorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMarisa Loach avatar Marisa LoachLeily Rabbani avatar Leily Rabbaniorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaVerena Moosmann avatar Verena MoosmannWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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UFR
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Australian BioCommons
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Collaborative Research Centre 992
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de.KCD
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The University of Melbourne
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ELIXIR Europe
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de.NBI