epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMallory Freeberg avatar Mallory Freebergorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoFlorian Heyl avatar Florian Heylorcid logoWendi Bacon avatar Wendi Baconorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMarisa Loach avatar Marisa Loachorcid logoMartin Čech avatar Martin Čechorcid logoTristan Reynolds avatar Tristan ReynoldsFriederike Dündar avatar Friederike DündarNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola SoranzoVerena Moosmann avatar Verena MoosmannGildas Le Corguillé avatar Gildas Le CorguilléJoachim Wolff avatar Joachim WolffWilliam Durand avatar William Durandorcid logoHelena Rasche avatar Helena Rascheorcid logoAnup Kumar avatar Anup KumarFidel Ramirez avatar Fidel RamirezMehmet Tekman avatar Mehmet TekmanTorsten Houwaart avatar Torsten Houwaartorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMaria Doyle avatar Maria Doyleorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoBjörn Grüning avatar Björn Grüningorcid logoWolfgang Maier avatar Wolfgang MaierMélanie Petera avatar Mélanie Peteraorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoBérénice Batut avatar Bérénice Batutorcid logoYvan Le Bras avatar Yvan Le BrasVivek Bhardwaj avatar Vivek Bhardwajorcid logoArmin Dadras avatar Armin Dadrasorcid logoLucille Delisle avatar Lucille DelisleDevon Ryan avatar Devon RyanLeily Rabbani avatar Leily Rabbaniorcid logoMo Heydarian avatar Mo HeydarianEkaterina Polkh avatar Ekaterina Polkhorcid logoTimon Schlegel avatar Timon Schlegel

Funding

These individuals or organisations provided funding support for the development of this resource

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Collaborative Research Centre 992
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The University of Melbourne
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de.NBI
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ELIXIR Europe
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Melbourne Bioinformatics
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UFR
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de.KCD
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Australian BioCommons