epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoWolfgang Maier avatar Wolfgang MaierMélanie Petera avatar Mélanie Peteraorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzTorsten Houwaart avatar Torsten Houwaartorcid logoBérénice Batut avatar Bérénice Batutorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMaria Doyle avatar Maria Doyleorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoArmin Dadras avatar Armin Dadrasorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMallory Freeberg avatar Mallory FreebergJoachim Wolff avatar Joachim Wolfforcid logoMartin Čech avatar Martin ČechVerena Moosmann avatar Verena MoosmannEkaterina Polkh avatar Ekaterina Polkhorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoHelena Rasche avatar Helena RascheVivek Bhardwaj avatar Vivek BhardwajMehmet Tekman avatar Mehmet Tekmanorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaFidel Ramirez avatar Fidel Ramirezorcid logoMarisa Loach avatar Marisa Loachorcid logoBjörn Grüning avatar Björn GrüningFriederike Dündar avatar Friederike Dündarorcid logoSaskia Hiltemann avatar Saskia HiltemannLeily Rabbani avatar Leily Rabbaniorcid logoLucille Delisle avatar Lucille Delisleorcid logoAnup Kumar avatar Anup Kumarorcid logoMo Heydarian avatar Mo HeydarianWilliam Durand avatar William Durandorcid logoWendi Bacon avatar Wendi BaconDevon Ryan avatar Devon Ryanorcid logoFlorian Heyl avatar Florian HeylNiall Beard avatar Niall BeardGildas Le Corguillé avatar Gildas Le Corguilléorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoTimon Schlegel avatar Timon Schlegel

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
Australian BioCommons
Logo
The University of Melbourne
Logo
ELIXIR Europe
Logo
Melbourne Bioinformatics
Logo
Collaborative Research Centre 992
Logo
de.NBI
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
de.KCD
Logo
UFR