epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoMarisa Loach avatar Marisa Loachorcid logoBérénice Batut avatar Bérénice Batutorcid logoLucille Delisle avatar Lucille Delisleorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoAnup Kumar avatar Anup Kumarorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMo Heydarian avatar Mo HeydarianDevon Ryan avatar Devon Ryanorcid logoTimon Schlegel avatar Timon Schlegelorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin Čechorcid logoArmin Dadras avatar Armin DadrasMehmet Tekman avatar Mehmet TekmanVerena Moosmann avatar Verena Moosmannorcid logoBjörn Grüning avatar Björn Grüningorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMaria Doyle avatar Maria Doyleorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi BaconFriederike Dündar avatar Friederike DündarTorsten Houwaart avatar Torsten HouwaartWilliam Durand avatar William DurandJoachim Wolff avatar Joachim Wolfforcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnika Erxleben avatar Anika ErxlebenVivek Bhardwaj avatar Vivek Bhardwajorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoYvan Le Bras avatar Yvan Le BrasGildas Le Corguillé avatar Gildas Le CorguilléFidel Ramirez avatar Fidel Ramirezorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoMallory Freeberg avatar Mallory Freebergorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoMélanie Petera avatar Mélanie Peteraorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoFlorian Heyl avatar Florian HeylLeily Rabbani avatar Leily RabbaniEkaterina Polkh avatar Ekaterina Polkh

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne
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UFR
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ELIXIR Europe
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de.NBI
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Melbourne Bioinformatics
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Australian BioCommons
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Collaborative Research Centre 992
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de.KCD