epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

Mélanie Petera avatar Mélanie PeteraFidel Ramirez avatar Fidel RamirezDevon Ryan avatar Devon Ryanorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMartin Čech avatar Martin Čechorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoFlorian Heyl avatar Florian Heylorcid logoBjörn Grüning avatar Björn GrüningTorsten Houwaart avatar Torsten Houwaartorcid logoAnup Kumar avatar Anup Kumarorcid logoBérénice Batut avatar Bérénice Batutorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoMallory Freeberg avatar Mallory Freebergorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMarisa Loach avatar Marisa Loachorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMaria Doyle avatar Maria DoyleVivek Bhardwaj avatar Vivek Bhardwajorcid logoMo Heydarian avatar Mo Heydarianorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin DadrasLeily Rabbani avatar Leily RabbaniNiall Beard avatar Niall Beardorcid logoLucille Delisle avatar Lucille Delisleorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoWendi Bacon avatar Wendi Baconorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoTimon Schlegel avatar Timon SchlegelVerena Moosmann avatar Verena Moosmannorcid logoWolfgang Maier avatar Wolfgang MaierEkaterina Polkh avatar Ekaterina Polkhorcid logoKhaled Jum'ah avatar Khaled Jum'ahFriederike Dündar avatar Friederike DündarMehmet Tekman avatar Mehmet TekmanWilliam Durand avatar William DurandJoachim Wolff avatar Joachim Wolff

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
The University of Melbourne
Logo
de.NBI
Logo
ELIXIR Europe
Logo
Australian BioCommons
Logo
de.KCD
Logo
UFR
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
Melbourne Bioinformatics
Logo
Collaborative Research Centre 992