epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoLucille Delisle avatar Lucille Delisleorcid logoSaskia Hiltemann avatar Saskia HiltemannMehmet Tekman avatar Mehmet Tekmanorcid logoArmin Dadras avatar Armin DadrasGildas Le Corguillé avatar Gildas Le Corguilléorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoHelena Rasche avatar Helena Rascheorcid logoMo Heydarian avatar Mo Heydarianorcid logoFlorian Heyl avatar Florian Heylorcid logoMaria Doyle avatar Maria DoyleTorsten Houwaart avatar Torsten Houwaartorcid logoAnup Kumar avatar Anup KumarFidel Ramirez avatar Fidel Ramirezorcid logoWendi Bacon avatar Wendi BaconNiall Beard avatar Niall Beardorcid logoTimon Schlegel avatar Timon SchlegelVivek Bhardwaj avatar Vivek Bhardwajorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBérénice Batut avatar Bérénice BatutLeily Rabbani avatar Leily Rabbaniorcid logoMarisa Loach avatar Marisa Loachorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoBjörn Grüning avatar Björn Grüningorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzWilliam Durand avatar William DurandEkaterina Polkh avatar Ekaterina PolkhFriederike Dündar avatar Friederike DündarVerena Moosmann avatar Verena Moosmannorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMartin Čech avatar Martin Čechorcid logoYvan Le Bras avatar Yvan Le BrasDevon Ryan avatar Devon RyanMélanie Petera avatar Mélanie Peteraorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoJoachim Wolff avatar Joachim Wolfforcid logoPavankumar Videm avatar Pavankumar Videm

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Australian BioCommons
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The University of Melbourne
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de.KCD
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Melbourne Bioinformatics
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Collaborative Research Centre 992
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ELIXIR Europe
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UFR