epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

Devon Ryan avatar Devon Ryanorcid logoTimon Schlegel avatar Timon Schlegelorcid logoMaria Doyle avatar Maria Doyleorcid logoLucille Delisle avatar Lucille DelisleJoachim Wolff avatar Joachim WolffFidel Ramirez avatar Fidel RamirezVivek Bhardwaj avatar Vivek BhardwajMélanie Petera avatar Mélanie Peteraorcid logoTristan Reynolds avatar Tristan ReynoldsEkaterina Polkh avatar Ekaterina Polkhorcid logoMo Heydarian avatar Mo Heydarianorcid logoBjörn Grüning avatar Björn GrüningLeily Rabbani avatar Leily Rabbaniorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoKhaled Jum'ah avatar Khaled Jum'ahGildas Le Corguillé avatar Gildas Le Corguilléorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMartin Čech avatar Martin Čechorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoFlorian Heyl avatar Florian HeylMehmet Tekman avatar Mehmet TekmanFriederike Dündar avatar Friederike DündarNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoArmin Dadras avatar Armin Dadrasorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoAnup Kumar avatar Anup KumarWilliam Durand avatar William DurandTorsten Houwaart avatar Torsten HouwaartVerena Moosmann avatar Verena Moosmannorcid logoMallory Freeberg avatar Mallory Freebergorcid logoWendi Bacon avatar Wendi Baconorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoHelena Rasche avatar Helena Rascheorcid logoMarisa Loach avatar Marisa Loach

Funding

These individuals or organisations provided funding support for the development of this resource

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Collaborative Research Centre 992
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Australian BioCommons
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne
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de.KCD
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ELIXIR Europe
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de.NBI
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Melbourne Bioinformatics
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UFR