epigenetics

Tutorials covering epigenetics

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Epigenetics

Lesson Slides Hands-on Recordings Input dataset Workflows
ATAC-Seq data analysis
CUT&RUN data analysis
DNA Methylation data analysis
Formation of the Super-Structures on the Inactive X
ChIP-seq
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
ChIP-seq
Infinium Human Methylation BeadChip
Introduction to ChIP-Seq data analysis
Introduction to DNA Methylation data analysis

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoMallory Freeberg avatar Mallory Freebergorcid logoArmin Dadras avatar Armin Dadrasorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoWolfgang Maier avatar Wolfgang MaierFriederike Dündar avatar Friederike Dündarorcid logoMo Heydarian avatar Mo HeydarianVivek Bhardwaj avatar Vivek Bhardwajorcid logoLucille Delisle avatar Lucille DelisleEkaterina Polkh avatar Ekaterina Polkhorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoWendi Bacon avatar Wendi BaconFidel Ramirez avatar Fidel Ramirezorcid logoMarisa Loach avatar Marisa Loachorcid logoBjörn Grüning avatar Björn Grüningorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnika Erxleben avatar Anika ErxlebenNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin Čechorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaTorsten Houwaart avatar Torsten Houwaartorcid logoBérénice Batut avatar Bérénice Batutorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoFlorian Heyl avatar Florian Heylorcid logoHelena Rasche avatar Helena RascheDevon Ryan avatar Devon Ryanorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoTimon Schlegel avatar Timon SchlegelWilliam Durand avatar William DurandMehmet Tekman avatar Mehmet TekmanJoachim Wolff avatar Joachim Wolfforcid logoAnup Kumar avatar Anup KumarLeily Rabbani avatar Leily RabbaniVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria DoyleMélanie Petera avatar Mélanie Petera

Funding

These individuals or organisations provided funding support for the development of this resource

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de.KCD
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The University of Melbourne
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Australian BioCommons
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de.NBI
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UFR
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ELIXIR Europe
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Collaborative Research Centre 992
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Melbourne Bioinformatics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.