Workflows

These workflows are associated with Pre-processing of 10X Single-Cell ATAC-seq Datasets

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Workflow Updated Import Has Tests Tested License Creators
scATAC-seq-Count-Matrix-Filtering.ga Apr 24, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!) 		✅ ❌ CC-BY-4.0 Pavankumar Videm
scATAC-seq-FASTQ-to-Count-Matrix.ga Apr 24, 2023 Launch in Tutorial Mode What is tutorial mode?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to UseGalaxy.org.au
Import to another server (≥23.0+ only!) 		✅ ❌ CC-BY-4.0 Pavankumar Videm

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button