Statistics and machine learning

Statistical Analyses for omics data and machine learning using Galaxy tools

Requirements

Before diving into this topic, we recommend you to have a look at:

Lesson	Hands-on	Input dataset	Workflows	Galaxy tour	Galaxy instances
Age prediction using machine learning	tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow		instances Galaxy Test Galaxy for Ecology UseGalaxy.eu UseGalaxy.org (Main)
Basics of machine learning	tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow	interactive_tour	instances Galaxy for Ecology UseGalaxy.eu
Interval-Wise Testing for omics data	tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow	interactive_tour	instances Galaxy for Ecology UseGalaxy.eu UseGalaxy.org (Main)
Machine learning: classification and regression	tutorial Toggle Dropdown FR JA ES PT AR	zenodo_link	workflow	interactive_tour	instances Galaxy Test Galaxy for Ecology UseGalaxy.eu UseGalaxy.org (Main)

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -d -p 8080:80 quay.io/galaxy/statistics-training

It will launch a flavored Galaxy instance available on http://localhost:8080.

This material is maintained by:

Fabio Cumbo

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

This material was contributed to by:

Bérénice Batut